miRNA display CGI


Results 1 - 20 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 5' -65.7 NC_006151.1 + 142876 0.69 0.355658
Target:  5'- -gGCCCCCaGCGCacccaagGCGAacccucGCGGGCGCc -3'
miRNA:   3'- ggCGGGGG-CGCGcg-----CGCU------CGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 142326 0.66 0.50346
Target:  5'- -gGCCCgCGCGCuCGCG-GCGccCGCu -3'
miRNA:   3'- ggCGGGgGCGCGcGCGCuCGCucGCG- -5'
29443 5' -65.7 NC_006151.1 + 142277 0.72 0.205661
Target:  5'- cCCGUCCCgGCGgccagaccggcCGgGacgaGAGCGAGCGCc -3'
miRNA:   3'- -GGCGGGGgCGC-----------GCgCg---CUCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 142096 0.67 0.442427
Target:  5'- cCCGCaggaCCUGCGCGgGCuGGGUGaAGCcCa -3'
miRNA:   3'- -GGCGg---GGGCGCGCgCG-CUCGC-UCGcG- -5'
29443 5' -65.7 NC_006151.1 + 141635 0.68 0.40948
Target:  5'- gUCGCUgCCGCgGCgGCGCG-GCGGGgcccCGCg -3'
miRNA:   3'- -GGCGGgGGCG-CG-CGCGCuCGCUC----GCG- -5'
29443 5' -65.7 NC_006151.1 + 141494 0.67 0.459452
Target:  5'- -aGCCUCCGCG-GCGaCGGGCGucuccacgGGgGCc -3'
miRNA:   3'- ggCGGGGGCGCgCGC-GCUCGC--------UCgCG- -5'
29443 5' -65.7 NC_006151.1 + 140362 0.66 0.494506
Target:  5'- aUCGCCCgCGuCGUcgaGCGCGGcuCGAGCuGCg -3'
miRNA:   3'- -GGCGGGgGC-GCG---CGCGCUc-GCUCG-CG- -5'
29443 5' -65.7 NC_006151.1 + 140278 0.66 0.485624
Target:  5'- aCGCCCgucgacgagcUCGUGCGCcggcgccgccuGCGGGaCGuGCGCu -3'
miRNA:   3'- gGCGGG----------GGCGCGCG-----------CGCUC-GCuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 139910 0.68 0.370518
Target:  5'- aCgGCUUCCGCGC-CGCGGGCucGuCGCc -3'
miRNA:   3'- -GgCGGGGGCGCGcGCGCUCGcuC-GCG- -5'
29443 5' -65.7 NC_006151.1 + 139816 0.79 0.069381
Target:  5'- gCCGUCUCCGCGacgcaCGCGCGGGUcGGCGCg -3'
miRNA:   3'- -GGCGGGGGCGC-----GCGCGCUCGcUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 139780 0.66 0.512485
Target:  5'- gCGCCCCC-CGauCGUcugucggaGAGCGcGCGCg -3'
miRNA:   3'- gGCGGGGGcGCgcGCG--------CUCGCuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 139638 0.72 0.22028
Target:  5'- uCCGgCgCCgGCGCGgggguCGCG-GCGGGCGCg -3'
miRNA:   3'- -GGCgG-GGgCGCGC-----GCGCuCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 139567 0.68 0.39359
Target:  5'- gCGCCCgguCCGCGaGCGCcuGGGCucGCGCc -3'
miRNA:   3'- gGCGGG---GGCGCgCGCG--CUCGcuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 139291 0.7 0.307013
Target:  5'- gCCGCCCUCG-GCGUcuGCG-GCGcGUGCu -3'
miRNA:   3'- -GGCGGGGGCgCGCG--CGCuCGCuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 139225 0.67 0.459452
Target:  5'- aCGCUgCCGCacaucGCGCGCGucucCG-GCGCg -3'
miRNA:   3'- gGCGGgGGCG-----CGCGCGCuc--GCuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 139169 0.67 0.450895
Target:  5'- gCGCCCUCGUGUggaucuuuGUGCuGGCGgucggGGCGCu -3'
miRNA:   3'- gGCGGGGGCGCG--------CGCGcUCGC-----UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 138814 0.7 0.28158
Target:  5'- gCgGCCUUCGUguacGCGCGCcagGAGCG-GCGCa -3'
miRNA:   3'- -GgCGGGGGCG----CGCGCG---CUCGCuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 138709 0.7 0.300493
Target:  5'- cCCGgCgCUGCGCGcCGCGcGCGGGuCGUg -3'
miRNA:   3'- -GGCgGgGGCGCGC-GCGCuCGCUC-GCG- -5'
29443 5' -65.7 NC_006151.1 + 138217 0.67 0.434049
Target:  5'- aCGCgCacuucaaCGgGCGCGCGcacgaguacGCGGGCGCg -3'
miRNA:   3'- gGCGgGg------GCgCGCGCGCu--------CGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 137638 0.74 0.16287
Target:  5'- uCCGCCCUCGUccGCGCccccgucccgGCGGaCGAGCGCc -3'
miRNA:   3'- -GGCGGGGGCG--CGCG----------CGCUcGCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.