miRNA display CGI


Results 1 - 20 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 5' -65.7 NC_006151.1 + 79083 1.11 0.000332
Target:  5'- aCCGCCCCCGCGCGCGCGAGCGAGCGCc -3'
miRNA:   3'- -GGCGGGGGCGCGCGCGCUCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 102575 0.87 0.017817
Target:  5'- gCGCgCCCGCGCGCGCGAgucccgcgagucgcaGCGGGCGCu -3'
miRNA:   3'- gGCGgGGGCGCGCGCGCU---------------CGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 123261 0.85 0.027944
Target:  5'- -gGCCgCCGCGCGCGCGGGCaccgucguggacGAGCGCg -3'
miRNA:   3'- ggCGGgGGCGCGCGCGCUCG------------CUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 96376 0.84 0.030942
Target:  5'- gCCGCCuCCaCGCGCGCGCGGuGCcGGCGCa -3'
miRNA:   3'- -GGCGG-GG-GCGCGCGCGCU-CGcUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 64476 0.84 0.034255
Target:  5'- gCCGCCgcggcggggacgCCCGCGgGCGCGGGCGgcgGGCGCg -3'
miRNA:   3'- -GGCGG------------GGGCGCgCGCGCUCGC---UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 57136 0.83 0.035137
Target:  5'- gUCGCCCCUGCGCacgcgGCGgGGGCGAGgGCg -3'
miRNA:   3'- -GGCGGGGGCGCG-----CGCgCUCGCUCgCG- -5'
29443 5' -65.7 NC_006151.1 + 50430 0.83 0.038596
Target:  5'- gCGCCCCUGCGCGCcgGCGGccugggcaccgcccGCGGGCGCu -3'
miRNA:   3'- gGCGGGGGCGCGCG--CGCU--------------CGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 115943 0.83 0.038891
Target:  5'- -gGCCCgCCGgGCGCGCGAgcGCGAGCGUc -3'
miRNA:   3'- ggCGGG-GGCgCGCGCGCU--CGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 130541 0.82 0.040913
Target:  5'- aCGCCCCCGCGCGa--GGGCG-GCGCg -3'
miRNA:   3'- gGCGGGGGCGCGCgcgCUCGCuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 83352 0.82 0.041962
Target:  5'- gUGCuCCCCG-GCGCGCGcGCGGGCGCg -3'
miRNA:   3'- gGCG-GGGGCgCGCGCGCuCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 81246 0.82 0.041962
Target:  5'- gCGCCCCCGCGCagGgGCaGGGCGAGCaGCg -3'
miRNA:   3'- gGCGGGGGCGCG--CgCG-CUCGCUCG-CG- -5'
29443 5' -65.7 NC_006151.1 + 58979 0.82 0.043037
Target:  5'- aCGCCUCCGCGgGCaCGAGCGAgaGCGCg -3'
miRNA:   3'- gGCGGGGGCGCgCGcGCUCGCU--CGCG- -5'
29443 5' -65.7 NC_006151.1 + 51216 0.82 0.045269
Target:  5'- gCCGCCcgcgggCCCGCGCaggcgGCGCGAGCGcucGGCGCa -3'
miRNA:   3'- -GGCGG------GGGCGCG-----CGCGCUCGC---UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 34598 0.81 0.048831
Target:  5'- gCGCCCUCggaGCGCGCGcCGAGCGcgaGGCGCg -3'
miRNA:   3'- gGCGGGGG---CGCGCGC-GCUCGC---UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 70661 0.81 0.050078
Target:  5'- cCCGUCCUcaCGCGCGcCGCcGGCGAGCGCu -3'
miRNA:   3'- -GGCGGGG--GCGCGC-GCGcUCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 15282 0.81 0.052665
Target:  5'- gCGCCCCgcugcgcagCGCGCuGCGCGAGCucaacGAGCGCg -3'
miRNA:   3'- gGCGGGG---------GCGCG-CGCGCUCG-----CUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 117279 0.81 0.052665
Target:  5'- gCCGCCgCCGacaGCGCGCGcGCGAGCuGCu -3'
miRNA:   3'- -GGCGGgGGCg--CGCGCGCuCGCUCG-CG- -5'
29443 5' -65.7 NC_006151.1 + 50142 0.8 0.056791
Target:  5'- aCGCgagCCCCGCGCGCGCccgacGAGCggacGAGCGCg -3'
miRNA:   3'- gGCG---GGGGCGCGCGCG-----CUCG----CUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 65387 0.8 0.056791
Target:  5'- gUGCCCCgGgCGCGcCGUGAGCGAGCGg -3'
miRNA:   3'- gGCGGGGgC-GCGC-GCGCUCGCUCGCg -5'
29443 5' -65.7 NC_006151.1 + 83086 0.8 0.061229
Target:  5'- aUCGCCCaCGCGUGCaccuCGAGCGGGCGCc -3'
miRNA:   3'- -GGCGGGgGCGCGCGc---GCUCGCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.