miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 3' -54.7 NC_006151.1 + 91755 0.66 0.930819
Target:  5'- aGCGGGcucggGCgGgcGGUGUGCGCCa -3'
miRNA:   3'- -UGUCCuaca-CGaCuuUCACGCGCGGc -5'
29446 3' -54.7 NC_006151.1 + 100869 0.66 0.930819
Target:  5'- gACuGGGccgccGUGaacCUGGAGGUGCuGCGCCGc -3'
miRNA:   3'- -UGuCCUa----CAC---GACUUUCACG-CGCGGC- -5'
29446 3' -54.7 NC_006151.1 + 29446 0.66 0.925443
Target:  5'- gGCGGGGagagGggacGCgGAGGGagcggGCGCGCCGg -3'
miRNA:   3'- -UGUCCUa---Ca---CGaCUUUCa----CGCGCGGC- -5'
29446 3' -54.7 NC_006151.1 + 42673 0.66 0.925443
Target:  5'- -gGGGAUGUGUgc---GUGCGaGCCGg -3'
miRNA:   3'- ugUCCUACACGacuuuCACGCgCGGC- -5'
29446 3' -54.7 NC_006151.1 + 89620 0.66 0.925443
Target:  5'- cGCgAGGAUGaGgaGcguGUGCGCGCCc -3'
miRNA:   3'- -UG-UCCUACaCgaCuuuCACGCGCGGc -5'
29446 3' -54.7 NC_006151.1 + 131848 0.66 0.925443
Target:  5'- aGCGGGgcG-GCcGAGAc-GCGCGCCGg -3'
miRNA:   3'- -UGUCCuaCaCGaCUUUcaCGCGCGGC- -5'
29446 3' -54.7 NC_006151.1 + 14267 0.67 0.901454
Target:  5'- uCGGGGUGgGCcGGGAGUGgGCGUgGc -3'
miRNA:   3'- uGUCCUACaCGaCUUUCACgCGCGgC- -5'
29446 3' -54.7 NC_006151.1 + 55388 0.67 0.880908
Target:  5'- aGCAGGAgGUGCggcgccugcgcGAgcAGGcccUGCGCGCCGc -3'
miRNA:   3'- -UGUCCUaCACGa----------CU--UUC---ACGCGCGGC- -5'
29446 3' -54.7 NC_006151.1 + 100057 0.67 0.873592
Target:  5'- cACGGGGUcGUGCgcgcgGccgccGAGGUGCucgagGCGCCGg -3'
miRNA:   3'- -UGUCCUA-CACGa----C-----UUUCACG-----CGCGGC- -5'
29446 3' -54.7 NC_006151.1 + 93366 0.67 0.873592
Target:  5'- -aAGGAUGacgGCcGGAGGcGCGCGCUa -3'
miRNA:   3'- ugUCCUACa--CGaCUUUCaCGCGCGGc -5'
29446 3' -54.7 NC_006151.1 + 93667 0.68 0.866051
Target:  5'- aGCAGGAg--GCUGucgcgcGGGGcGCGCGCCc -3'
miRNA:   3'- -UGUCCUacaCGAC------UUUCaCGCGCGGc -5'
29446 3' -54.7 NC_006151.1 + 71204 0.68 0.842134
Target:  5'- cGCAGGAgcucGUGUccgUGAccGUgggcgcGCGCGCCGa -3'
miRNA:   3'- -UGUCCUa---CACG---ACUuuCA------CGCGCGGC- -5'
29446 3' -54.7 NC_006151.1 + 81881 0.68 0.833754
Target:  5'- cGCAGGAgcgccgGCgccGAG-GCGCGCCGg -3'
miRNA:   3'- -UGUCCUaca---CGacuUUCaCGCGCGGC- -5'
29446 3' -54.7 NC_006151.1 + 125534 0.69 0.807499
Target:  5'- ---cGcgGUGCgUGGAGGUGCGCGgCGg -3'
miRNA:   3'- ugucCuaCACG-ACUUUCACGCGCgGC- -5'
29446 3' -54.7 NC_006151.1 + 44807 0.69 0.789152
Target:  5'- -aAGGggGUGCuaUGggGGUGCgaggGCGUCGg -3'
miRNA:   3'- ugUCCuaCACG--ACuuUCACG----CGCGGC- -5'
29446 3' -54.7 NC_006151.1 + 3276 0.69 0.783529
Target:  5'- cGCGGcGAUGUGCgccagggcggccgggUcGAAGGUGaGCGCCGg -3'
miRNA:   3'- -UGUC-CUACACG---------------A-CUUUCACgCGCGGC- -5'
29446 3' -54.7 NC_006151.1 + 106320 0.69 0.779752
Target:  5'- cGCuGGAcgcgGUGCUGGAcc-GCGCGCUGg -3'
miRNA:   3'- -UGuCCUa---CACGACUUucaCGCGCGGC- -5'
29446 3' -54.7 NC_006151.1 + 73771 0.7 0.770215
Target:  5'- cGCAGGGcacGUGCUGGgcGgcgGCGCGCa- -3'
miRNA:   3'- -UGUCCUa--CACGACUuuCa--CGCGCGgc -5'
29446 3' -54.7 NC_006151.1 + 8550 0.7 0.750764
Target:  5'- -gGGGGUGUGCgaGAGAGaGCGUGCg- -3'
miRNA:   3'- ugUCCUACACGa-CUUUCaCGCGCGgc -5'
29446 3' -54.7 NC_006151.1 + 99401 0.7 0.730878
Target:  5'- uACGGGcccggGCUGGAcuacGUGCGCGCCu -3'
miRNA:   3'- -UGUCCuaca-CGACUUu---CACGCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.