Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29446 | 3' | -54.7 | NC_006151.1 | + | 87782 | 0.72 | 0.647498 |
Target: 5'- gGCGGGAgagaGUGUgggugggagagggUGGGAGaggGCGCGCCGa -3' miRNA: 3'- -UGUCCUa---CACG-------------ACUUUCa--CGCGCGGC- -5' |
|||||||
29446 | 3' | -54.7 | NC_006151.1 | + | 90131 | 0.72 | 0.638094 |
Target: 5'- gGCAGGcgGgGCggu-AGUGCGCGUCGg -3' miRNA: 3'- -UGUCCuaCaCGacuuUCACGCGCGGC- -5' |
|||||||
29446 | 3' | -54.7 | NC_006151.1 | + | 64653 | 0.73 | 0.596331 |
Target: 5'- cGCAGGAaccGCagGAAGGUGCGCGCgGc -3' miRNA: 3'- -UGUCCUacaCGa-CUUUCACGCGCGgC- -5' |
|||||||
29446 | 3' | -54.7 | NC_006151.1 | + | 135442 | 0.74 | 0.544791 |
Target: 5'- cCAGGuUGcGCUGGcaggccugguAGGUGCGCGCCa -3' miRNA: 3'- uGUCCuACaCGACU----------UUCACGCGCGGc -5' |
|||||||
29446 | 3' | -54.7 | NC_006151.1 | + | 74417 | 1.08 | 0.003652 |
Target: 5'- cACAGGAUGUGCUGAAAGUGCGCGCCGu -3' miRNA: 3'- -UGUCCUACACGACUUUCACGCGCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home