miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 74455 1.09 0.000449
Target:  5'- cUCCGGCAGGCGCUCGGCGAGCCCGUCg -3'
miRNA:   3'- -AGGCCGUCCGCGAGCCGCUCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 81777 0.83 0.037301
Target:  5'- aCCGGgAcGCGCUCGGCGcGCCCGUCg -3'
miRNA:   3'- aGGCCgUcCGCGAGCCGCuCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 5358 0.81 0.05218
Target:  5'- cUCCGGCGcGGCGC-CGGCGGGgCUGUCu -3'
miRNA:   3'- -AGGCCGU-CCGCGaGCCGCUCgGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 2387 0.79 0.077341
Target:  5'- gCCGGCAGGCccucggggccgcggaGCUCGGCGAGgcCCCGg- -3'
miRNA:   3'- aGGCCGUCCG---------------CGAGCCGCUC--GGGCag -5'
29446 5' -64.7 NC_006151.1 + 88089 0.78 0.082607
Target:  5'- -gCGGCAGGUGUagUCGaCGGGCCCGUCg -3'
miRNA:   3'- agGCCGUCCGCG--AGCcGCUCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 135158 0.77 0.106213
Target:  5'- cCCGGCGGGCGCggccCGGaCGGGCgCCGg- -3'
miRNA:   3'- aGGCCGUCCGCGa---GCC-GCUCG-GGCag -5'
29446 5' -64.7 NC_006151.1 + 129434 0.76 0.111641
Target:  5'- gUCCGGCcccaagugggcgGGGCGCaCGGCcgugggcgggacGAGCCCGUCc -3'
miRNA:   3'- -AGGCCG------------UCCGCGaGCCG------------CUCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 21550 0.76 0.111641
Target:  5'- gCCGGggccUGGGC-CUCGGCGAGCCCGcCg -3'
miRNA:   3'- aGGCC----GUCCGcGAGCCGCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 5093 0.75 0.136047
Target:  5'- -gCGGCGGGCGC-CGGCGgagacgguggcGGCCCGg- -3'
miRNA:   3'- agGCCGUCCGCGaGCCGC-----------UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 18152 0.75 0.136047
Target:  5'- gUCGGCGGGgGCggCGGCGGGCauGUCg -3'
miRNA:   3'- aGGCCGUCCgCGa-GCCGCUCGggCAG- -5'
29446 5' -64.7 NC_006151.1 + 59478 0.75 0.146405
Target:  5'- cUCCGGCgAGGCGCccUCGaaGAGCCCGg- -3'
miRNA:   3'- -AGGCCG-UCCGCG--AGCcgCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 54424 0.74 0.153705
Target:  5'- gCUGGCGcGGCGCuUCGGCGAcgaggcGCCCGcCg -3'
miRNA:   3'- aGGCCGU-CCGCG-AGCCGCU------CGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 81368 0.74 0.153705
Target:  5'- cCCGGCGGGCGC-CaGcGCGAGCCgCGcCg -3'
miRNA:   3'- aGGCCGUCCGCGaG-C-CGCUCGG-GCaG- -5'
29446 5' -64.7 NC_006151.1 + 139637 0.74 0.157477
Target:  5'- aUCCGGCGccGGCGCgggggucgCGGCGGGCgCGcCg -3'
miRNA:   3'- -AGGCCGU--CCGCGa-------GCCGCUCGgGCaG- -5'
29446 5' -64.7 NC_006151.1 + 39801 0.74 0.157477
Target:  5'- aCCGcUGGGgGCUCGGCGccccgcugcGGCCCGUCu -3'
miRNA:   3'- aGGCcGUCCgCGAGCCGC---------UCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 96800 0.73 0.17677
Target:  5'- cCCGaGCcgGGGCGCgcgggcuuuuagCGGCGGGCCCGcCa -3'
miRNA:   3'- aGGC-CG--UCCGCGa-----------GCCGCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 111852 0.73 0.177618
Target:  5'- gUCGGgGGGCGCUCGGgGucgcAGgCCGUCu -3'
miRNA:   3'- aGGCCgUCCGCGAGCCgC----UCgGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 83562 0.73 0.177618
Target:  5'- cUCgGGCGGGCcCUCGaccGCGGGCCCGa- -3'
miRNA:   3'- -AGgCCGUCCGcGAGC---CGCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 2282 0.73 0.177618
Target:  5'- gCCGGCgGGGCGCccgcggCGGCGAcggcGCCCGg- -3'
miRNA:   3'- aGGCCG-UCCGCGa-----GCCGCU----CGGGCag -5'
29446 5' -64.7 NC_006151.1 + 97290 0.73 0.177618
Target:  5'- -gCGGCGGGCGUgUUGaGCcGGCCCGUCg -3'
miRNA:   3'- agGCCGUCCGCG-AGC-CGcUCGGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.