miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 647 0.68 0.373487
Target:  5'- gCCGGCuuccgGGGCGCggccggGGCGGGCuCCG-Cg -3'
miRNA:   3'- aGGCCG-----UCCGCGag----CCGCUCG-GGCaG- -5'
29446 5' -64.7 NC_006151.1 + 2282 0.73 0.177618
Target:  5'- gCCGGCgGGGCGCccgcggCGGCGAcggcGCCCGg- -3'
miRNA:   3'- aGGCCG-UCCGCGa-----GCCGCU----CGGGCag -5'
29446 5' -64.7 NC_006151.1 + 2387 0.79 0.077341
Target:  5'- gCCGGCAGGCccucggggccgcggaGCUCGGCGAGgcCCCGg- -3'
miRNA:   3'- aGGCCGUCCG---------------CGAGCCGCUC--GGGCag -5'
29446 5' -64.7 NC_006151.1 + 2533 0.68 0.38128
Target:  5'- cCCGagcGCGGaGCGCU-GGCGGGCCaUGUCc -3'
miRNA:   3'- aGGC---CGUC-CGCGAgCCGCUCGG-GCAG- -5'
29446 5' -64.7 NC_006151.1 + 2596 0.69 0.350024
Target:  5'- -gCGGUAGGCGCgCGGCGgcagcgggaccggGGUCCGg- -3'
miRNA:   3'- agGCCGUCCGCGaGCCGC-------------UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 3063 0.67 0.437912
Target:  5'- gUCCGGCgugcagaggcgguGGGCGaaggCGGCGAGCagCGcCg -3'
miRNA:   3'- -AGGCCG-------------UCCGCga--GCCGCUCGg-GCaG- -5'
29446 5' -64.7 NC_006151.1 + 3133 0.72 0.204781
Target:  5'- gCCgGGCgcgGGGCGCccUCGGCGGGCUCGg- -3'
miRNA:   3'- aGG-CCG---UCCGCG--AGCCGCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 3453 0.71 0.240944
Target:  5'- gUCgGGCgcgGGGUGCUCGGgcaUGGGCCCGa- -3'
miRNA:   3'- -AGgCCG---UCCGCGAGCC---GCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 3886 0.67 0.438768
Target:  5'- gCCGGCGccGGCGCUgGGacgaCGAGgCCGg- -3'
miRNA:   3'- aGGCCGU--CCGCGAgCC----GCUCgGGCag -5'
29446 5' -64.7 NC_006151.1 + 3936 0.7 0.301648
Target:  5'- --gGGCAGGCcgggcgcggGCUCcGCGGGCCCGg- -3'
miRNA:   3'- aggCCGUCCG---------CGAGcCGCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 3973 0.71 0.246525
Target:  5'- -gCGGC-GGC-CUCGGCGAGCCgGcCg -3'
miRNA:   3'- agGCCGuCCGcGAGCCGCUCGGgCaG- -5'
29446 5' -64.7 NC_006151.1 + 4218 0.66 0.473761
Target:  5'- -gCGGCcgGGGCGCg-GGCGGGCgCGg- -3'
miRNA:   3'- agGCCG--UCCGCGagCCGCUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 4391 0.68 0.365803
Target:  5'- cCCGGCgcGGGgGUccgCGGCGcGGCCCGg- -3'
miRNA:   3'- aGGCCG--UCCgCGa--GCCGC-UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 4922 0.7 0.314435
Target:  5'- cCCGaGCGGGgugaGCagcggcccgucggUCGGCGggGGCCCGUCg -3'
miRNA:   3'- aGGC-CGUCCg---CG-------------AGCCGC--UCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 5093 0.75 0.136047
Target:  5'- -gCGGCGGGCGC-CGGCGgagacgguggcGGCCCGg- -3'
miRNA:   3'- agGCCGUCCGCGaGCCGC-----------UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 5358 0.81 0.05218
Target:  5'- cUCCGGCGcGGCGC-CGGCGGGgCUGUCu -3'
miRNA:   3'- -AGGCCGU-CCGCGaGCCGCUCgGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 5529 0.68 0.389181
Target:  5'- -gCGGCcgAGGaucgagccgccuCGCggCGGCGGGCUCGUCg -3'
miRNA:   3'- agGCCG--UCC------------GCGa-GCCGCUCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 6476 0.71 0.245962
Target:  5'- cUCUGGCGGGCcgagagcCUCGGUGGGUcgggcguCCGUCg -3'
miRNA:   3'- -AGGCCGUCCGc------GAGCCGCUCG-------GGCAG- -5'
29446 5' -64.7 NC_006151.1 + 7015 0.67 0.421835
Target:  5'- gUCCGGCccccgcGGCGgccauCUCGGCucGCCCGg- -3'
miRNA:   3'- -AGGCCGu-----CCGC-----GAGCCGcuCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 7661 0.68 0.397188
Target:  5'- cUCGGCGcGCGCUCcgagGGCGccccAGCCgGUCg -3'
miRNA:   3'- aGGCCGUcCGCGAG----CCGC----UCGGgCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.