miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29448 3' -64.1 NC_006151.1 + 64423 0.66 0.521897
Target:  5'- cGCUCUC-GCUCUgcgcgcGcGUGGCCGCCUCc -3'
miRNA:   3'- uCGGGGGcCGAGAa-----C-CGCUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 64844 0.66 0.493987
Target:  5'- uGUCCCCGGCgagggcCUcGGCGgaggGCCGCUg- -3'
miRNA:   3'- uCGGGGGCCGa-----GAaCCGC----UGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 65776 0.67 0.457881
Target:  5'- cGCCgCCGGCggCggcgaUGGCG-CCGCC-Cg -3'
miRNA:   3'- uCGGgGGCCGa-Ga----ACCGCuGGCGGaG- -5'
29448 3' -64.1 NC_006151.1 + 65936 0.67 0.457881
Target:  5'- cGCCgCCGGCccaguccucgUCgaGcGCGGCCGCgUCg -3'
miRNA:   3'- uCGGgGGCCG----------AGaaC-CGCUGGCGgAG- -5'
29448 3' -64.1 NC_006151.1 + 69671 0.74 0.170045
Target:  5'- aAGCCCCCGcGCgucagCUgcgccucgccgucgaUGGUGGCCGCCg- -3'
miRNA:   3'- -UCGGGGGC-CGa----GA---------------ACCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 69740 0.7 0.322331
Target:  5'- uGGCCCCCcGCggcc-GCGACCGCCg- -3'
miRNA:   3'- -UCGGGGGcCGagaacCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 72905 1.09 0.000482
Target:  5'- cAGCCCCCGGCUCUUGGCGACCGCCUCg -3'
miRNA:   3'- -UCGGGGGCCGAGAACCGCUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 75262 0.66 0.531337
Target:  5'- -aCCUCCgcgGGCUCcUGGCGcagcGCCGCCa- -3'
miRNA:   3'- ucGGGGG---CCGAGaACCGC----UGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 75631 0.66 0.521897
Target:  5'- gAGCCCaCgGGCUUgccgucgucGGgGGCCGgCUCg -3'
miRNA:   3'- -UCGGG-GgCCGAGaa-------CCgCUGGCgGAG- -5'
29448 3' -64.1 NC_006151.1 + 76804 0.69 0.366573
Target:  5'- cAGCgCCCCGGCgagggcgggcgCguagUGGCGGcCCGCgUCc -3'
miRNA:   3'- -UCG-GGGGCCGa----------Ga---ACCGCU-GGCGgAG- -5'
29448 3' -64.1 NC_006151.1 + 77245 0.7 0.309178
Target:  5'- cGcCCCCCGGCggguuuaaaggagUGGuCGcGCCGCCUCg -3'
miRNA:   3'- uC-GGGGGCCGaga----------ACC-GC-UGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 79765 0.73 0.199286
Target:  5'- gGGUCCCCGGUcCacGGCGGCCggaucgcgGCCUCg -3'
miRNA:   3'- -UCGGGGGCCGaGaaCCGCUGG--------CGGAG- -5'
29448 3' -64.1 NC_006151.1 + 81247 0.69 0.366573
Target:  5'- cGCCCCCGcGCaggggCagGGCGAgcagCGCCUCg -3'
miRNA:   3'- uCGGGGGC-CGa----GaaCCGCUg---GCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 81900 0.68 0.414823
Target:  5'- aGGCgCgCCGG-UCgcGGCGcGCCGCCUCg -3'
miRNA:   3'- -UCGgG-GGCCgAGaaCCGC-UGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 86194 0.68 0.406513
Target:  5'- uGCCCCCGGCg---GGCccGCUGCCcaUCa -3'
miRNA:   3'- uCGGGGGCCGagaaCCGc-UGGCGG--AG- -5'
29448 3' -64.1 NC_006151.1 + 87460 0.68 0.406513
Target:  5'- cGCCCCCgcuccGGCUCcagcagcGGCaGCCGCCg- -3'
miRNA:   3'- uCGGGGG-----CCGAGaa-----CCGcUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 88715 0.72 0.234989
Target:  5'- cGCCCUCGG-UCUcGGCGuCCGCCg- -3'
miRNA:   3'- uCGGGGGCCgAGAaCCGCuGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 89583 0.67 0.440365
Target:  5'- cGCCCaUgGGCUCgccGGCGGCCGUg-- -3'
miRNA:   3'- uCGGG-GgCCGAGaa-CCGCUGGCGgag -5'
29448 3' -64.1 NC_006151.1 + 90631 0.66 0.521897
Target:  5'- cGGCCCgCgGGCgCUUGGCGAUgGgCg- -3'
miRNA:   3'- -UCGGG-GgCCGaGAACCGCUGgCgGag -5'
29448 3' -64.1 NC_006151.1 + 94859 0.68 0.390211
Target:  5'- aAGCCCUCGcuGCUCUcGGUGACCuGCgaCg -3'
miRNA:   3'- -UCGGGGGC--CGAGAaCCGCUGG-CGgaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.