miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29448 3' -64.1 NC_006151.1 + 35733 0.67 0.449076
Target:  5'- aAGaCUCCGGCUCUccGGCGGCUaucaGcCCUCg -3'
miRNA:   3'- -UCgGGGGCCGAGAa-CCGCUGG----C-GGAG- -5'
29448 3' -64.1 NC_006151.1 + 35959 0.68 0.406513
Target:  5'- cAGCCa---GCUCcUGGCGGCCGCCg- -3'
miRNA:   3'- -UCGGgggcCGAGaACCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 36320 0.71 0.27591
Target:  5'- gGGCCCcggucccgggCCGGCUCcgGGCcccGGCCGCCg- -3'
miRNA:   3'- -UCGGG----------GGCCGAGaaCCG---CUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 36390 0.7 0.315357
Target:  5'- gGGCCCCCGGCggccccgGGCGcucguCCcCCUCc -3'
miRNA:   3'- -UCGGGGGCCGagaa---CCGCu----GGcGGAG- -5'
29448 3' -64.1 NC_006151.1 + 37187 0.73 0.204081
Target:  5'- cGGCCCCgCGGCcCUcGGCcuccuCCGCCUCc -3'
miRNA:   3'- -UCGGGG-GCCGaGAaCCGcu---GGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 37874 0.67 0.449076
Target:  5'- cGGaCCCCCGcGC-CggggaGGCGACCGUCg- -3'
miRNA:   3'- -UC-GGGGGC-CGaGaa---CCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 38278 0.68 0.423236
Target:  5'- uGGCCgcggCCCGGCUCgccgaGGCCGCCg- -3'
miRNA:   3'- -UCGG----GGGCCGAGaaccgCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 38341 0.66 0.521897
Target:  5'- uGCCCCC-GCUC-UGGCccgagcaGCCcgGCCUCg -3'
miRNA:   3'- uCGGGGGcCGAGaACCGc------UGG--CGGAG- -5'
29448 3' -64.1 NC_006151.1 + 39335 0.66 0.493987
Target:  5'- uGCUCgCGGCUCggcgcGGCGcggcGCCGgCUCa -3'
miRNA:   3'- uCGGGgGCCGAGaa---CCGC----UGGCgGAG- -5'
29448 3' -64.1 NC_006151.1 + 50332 0.72 0.213972
Target:  5'- cGGCCgCCCGGCgCcUGGCcGCgGCCUCc -3'
miRNA:   3'- -UCGG-GGGCCGaGaACCGcUGgCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 52376 0.67 0.440365
Target:  5'- cGCCCCCGGggCccgcgggGGCGgcgggcGCCGCCg- -3'
miRNA:   3'- uCGGGGGCCgaGaa-----CCGC------UGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 55062 0.66 0.512522
Target:  5'- cGGCgaggaCCCGGCgggCUcGGCcgcGGCgCGCCUCg -3'
miRNA:   3'- -UCGg----GGGCCGa--GAaCCG---CUG-GCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 56548 0.71 0.257712
Target:  5'- gGGCCCCugcuCGGC-CUgccgGGCGACgCGCCg- -3'
miRNA:   3'- -UCGGGG----GCCGaGAa---CCGCUG-GCGGag -5'
29448 3' -64.1 NC_006151.1 + 57452 0.66 0.512522
Target:  5'- cGGCCCCCGcgucggccagguGCcgCgccGCGGCgGCCUCg -3'
miRNA:   3'- -UCGGGGGC------------CGa-GaacCGCUGgCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 57506 0.73 0.208976
Target:  5'- cGCgCUCGGCcgCggcggcGGCGGCCGCCUCc -3'
miRNA:   3'- uCGgGGGCCGa-Gaa----CCGCUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 57608 0.69 0.358916
Target:  5'- cGgCCUCGGCc----GCGGCCGCCUCg -3'
miRNA:   3'- uCgGGGGCCGagaacCGCUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 58004 0.66 0.521897
Target:  5'- cGCCUCCGGCgCggccGCGGCCaCCUUg -3'
miRNA:   3'- uCGGGGGCCGaGaac-CGCUGGcGGAG- -5'
29448 3' -64.1 NC_006151.1 + 62573 0.66 0.512522
Target:  5'- uGGCCCCCGGgUCg-GGCGACgacgaGUUUg -3'
miRNA:   3'- -UCGGGGGCCgAGaaCCGCUGg----CGGAg -5'
29448 3' -64.1 NC_006151.1 + 64113 0.66 0.503217
Target:  5'- aGGUCguggCCCGGCgg-UGGCGcgcCCGUCUCg -3'
miRNA:   3'- -UCGG----GGGCCGagaACCGCu--GGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 64202 0.66 0.484834
Target:  5'- cGCCCCgGGCaggUCcgGcGUGGgCGCCUCg -3'
miRNA:   3'- uCGGGGgCCG---AGaaC-CGCUgGCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.