miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29448 3' -64.1 NC_006151.1 + 75631 0.66 0.521897
Target:  5'- gAGCCCaCgGGCUUgccgucgucGGgGGCCGgCUCg -3'
miRNA:   3'- -UCGGG-GgCCGAGaa-------CCgCUGGCgGAG- -5'
29448 3' -64.1 NC_006151.1 + 10489 0.66 0.521897
Target:  5'- gAGCCgCCCGGCgc---GCGcCCGCCg- -3'
miRNA:   3'- -UCGG-GGGCCGagaacCGCuGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 141658 0.66 0.521897
Target:  5'- gGGCCCCgCgGGCUCguugUGGaggcauguCUGCCUCc -3'
miRNA:   3'- -UCGGGG-G-CCGAGa---ACCgcu-----GGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 103894 0.66 0.521897
Target:  5'- cGCCaCCUGGCgCUggaggUGGCGcgcgcgGCCGCCg- -3'
miRNA:   3'- uCGG-GGGCCGaGA-----ACCGC------UGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 102694 0.66 0.521897
Target:  5'- gGGCgCCCGGCgcg-GGCGGCgCgGCCg- -3'
miRNA:   3'- -UCGgGGGCCGagaaCCGCUG-G-CGGag -5'
29448 3' -64.1 NC_006151.1 + 64423 0.66 0.521897
Target:  5'- cGCUCUC-GCUCUgcgcgcGcGUGGCCGCCUCc -3'
miRNA:   3'- uCGGGGGcCGAGAa-----C-CGCUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 58004 0.66 0.521897
Target:  5'- cGCCUCCGGCgCggccGCGGCCaCCUUg -3'
miRNA:   3'- uCGGGGGCCGaGaac-CGCUGGcGGAG- -5'
29448 3' -64.1 NC_006151.1 + 38341 0.66 0.521897
Target:  5'- uGCCCCC-GCUC-UGGCccgagcaGCCcgGCCUCg -3'
miRNA:   3'- uCGGGGGcCGAGaACCGc------UGG--CGGAG- -5'
29448 3' -64.1 NC_006151.1 + 65776 0.67 0.457881
Target:  5'- cGCCgCCGGCggCggcgaUGGCG-CCGCC-Cg -3'
miRNA:   3'- uCGGgGGCCGa-Ga----ACCGCuGGCGGaG- -5'
29448 3' -64.1 NC_006151.1 + 37874 0.67 0.449076
Target:  5'- cGGaCCCCCGcGC-CggggaGGCGACCGUCg- -3'
miRNA:   3'- -UC-GGGGGC-CGaGaa---CCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 128547 0.67 0.449076
Target:  5'- gGGCCCgCCGGCgc--GGUG-CCGCC-Ca -3'
miRNA:   3'- -UCGGG-GGCCGagaaCCGCuGGCGGaG- -5'
29448 3' -64.1 NC_006151.1 + 113971 0.67 0.449076
Target:  5'- cAGCCCUCGGa-CgaGGUGACCaccgugcgcgGCCUCu -3'
miRNA:   3'- -UCGGGGGCCgaGaaCCGCUGG----------CGGAG- -5'
29448 3' -64.1 NC_006151.1 + 109931 0.67 0.449076
Target:  5'- cGCCgCCGGcCUCUccccugGGCGGCCucgGCCg- -3'
miRNA:   3'- uCGGgGGCC-GAGAa-----CCGCUGG---CGGag -5'
29448 3' -64.1 NC_006151.1 + 12141 0.67 0.457881
Target:  5'- cGCCCUCGuuccaucaUCUcGGCGuacucGCCGCCUCg -3'
miRNA:   3'- uCGGGGGCcg------AGAaCCGC-----UGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 65936 0.67 0.457881
Target:  5'- cGCCgCCGGCccaguccucgUCgaGcGCGGCCGCgUCg -3'
miRNA:   3'- uCGGgGGCCG----------AGaaC-CGCUGGCGgAG- -5'
29448 3' -64.1 NC_006151.1 + 134816 0.67 0.466778
Target:  5'- cGCCggaCCCGGacggUGGCGACCGCg-- -3'
miRNA:   3'- uCGG---GGGCCgagaACCGCUGGCGgag -5'
29448 3' -64.1 NC_006151.1 + 8320 0.67 0.475764
Target:  5'- gAGCCCCCGGggcgcgcgggcCUCgaucGCGcCCGCCg- -3'
miRNA:   3'- -UCGGGGGCC-----------GAGaac-CGCuGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 119038 0.67 0.475764
Target:  5'- gGGCgCCaaggaCGGCggCgccGCGGCCGCCUCc -3'
miRNA:   3'- -UCG-GGg----GCCGa-GaacCGCUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 131508 0.67 0.475764
Target:  5'- gAGCCCCgcgcgggggaaCGGCuggaagcgcugcUCUU-GCGAgCGCCUCg -3'
miRNA:   3'- -UCGGGG-----------GCCG------------AGAAcCGCUgGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 2226 0.67 0.449076
Target:  5'- cGCCCCCGGCggc-GGCGcggacGCUgGUCUCg -3'
miRNA:   3'- uCGGGGGCCGagaaCCGC-----UGG-CGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.