miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29448 3' -64.1 NC_006151.1 + 36320 0.71 0.27591
Target:  5'- gGGCCCcggucccgggCCGGCUCcgGGCcccGGCCGCCg- -3'
miRNA:   3'- -UCGGG----------GGCCGAGaaCCG---CUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 3591 0.71 0.27591
Target:  5'- gGGCCCCCGGUccUCUUcgucgucgcGGUGGCCGUg-- -3'
miRNA:   3'- -UCGGGGGCCG--AGAA---------CCGCUGGCGgag -5'
29448 3' -64.1 NC_006151.1 + 125208 0.7 0.288604
Target:  5'- gGGCCCCgCGGCcCcc-GCGGCCGCCcgUCg -3'
miRNA:   3'- -UCGGGG-GCCGaGaacCGCUGGCGG--AG- -5'
29448 3' -64.1 NC_006151.1 + 77245 0.7 0.309178
Target:  5'- cGcCCCCCGGCggguuuaaaggagUGGuCGcGCCGCCUCg -3'
miRNA:   3'- uC-GGGGGCCGaga----------ACC-GC-UGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 36390 0.7 0.315357
Target:  5'- gGGCCCCCGGCggccccgGGCGcucguCCcCCUCc -3'
miRNA:   3'- -UCGGGGGCCGagaa---CCGCu----GGcGGAG- -5'
29448 3' -64.1 NC_006151.1 + 69740 0.7 0.322331
Target:  5'- uGGCCCCCcGCggcc-GCGACCGCCg- -3'
miRNA:   3'- -UCGGGGGcCGagaacCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 111572 0.7 0.322331
Target:  5'- cGCCCCCGGCgcgCUUGaugucguCGAgCGCCg- -3'
miRNA:   3'- uCGGGGGCCGa--GAACc------GCUgGCGGag -5'
29448 3' -64.1 NC_006151.1 + 112736 0.7 0.322331
Target:  5'- uGCCCCCcgugcgccacGGCcgUCUUcGUGGCCGCCUUc -3'
miRNA:   3'- uCGGGGG----------CCG--AGAAcCGCUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 6774 0.69 0.32942
Target:  5'- uGCaugCCCGGCcCaagaUGGCGGCCGCCg- -3'
miRNA:   3'- uCGg--GGGCCGaGa---ACCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 29078 0.69 0.32942
Target:  5'- gGGCCCCgagaCGGC-CgcGGCGACCGUCcCg -3'
miRNA:   3'- -UCGGGG----GCCGaGaaCCGCUGGCGGaG- -5'
29448 3' -64.1 NC_006151.1 + 107988 0.69 0.336623
Target:  5'- aAGCCCCCGGCgcagcccGCcACCGCCg- -3'
miRNA:   3'- -UCGGGGGCCGagaac--CGcUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 108709 0.69 0.336623
Target:  5'- gAGCCCCCGGgag-UGGUGGCCagcGCCg- -3'
miRNA:   3'- -UCGGGGGCCgagaACCGCUGG---CGGag -5'
29448 3' -64.1 NC_006151.1 + 131036 0.69 0.343941
Target:  5'- aGGCCUCCcGCUCgucggGGCcggaGGCCGUCUCc -3'
miRNA:   3'- -UCGGGGGcCGAGaa---CCG----CUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 130542 0.69 0.343941
Target:  5'- cGCCCCCGcGCgag-GGCGGCgCGCUg- -3'
miRNA:   3'- uCGGGGGC-CGagaaCCGCUG-GCGGag -5'
29448 3' -64.1 NC_006151.1 + 32237 0.69 0.343941
Target:  5'- -cCUCCUGGC-CgcGGCGACCGCCg- -3'
miRNA:   3'- ucGGGGGCCGaGaaCCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 97860 0.69 0.358916
Target:  5'- cGUCgUCCGcGUUCUcGGCGGCCGCCa- -3'
miRNA:   3'- uCGG-GGGC-CGAGAaCCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 57608 0.69 0.358916
Target:  5'- cGgCCUCGGCc----GCGGCCGCCUCg -3'
miRNA:   3'- uCgGGGGCCGagaacCGCUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 76804 0.69 0.366573
Target:  5'- cAGCgCCCCGGCgagggcgggcgCguagUGGCGGcCCGCgUCc -3'
miRNA:   3'- -UCG-GGGGCCGa----------Ga---ACCGCU-GGCGgAG- -5'
29448 3' -64.1 NC_006151.1 + 81247 0.69 0.366573
Target:  5'- cGCCCCCGcGCaggggCagGGCGAgcagCGCCUCg -3'
miRNA:   3'- uCGGGGGC-CGa----GaaCCGCUg---GCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 134975 0.68 0.374342
Target:  5'- cAGCCUCCGGgccUUCUcgGGCGGgCGCgUCu -3'
miRNA:   3'- -UCGGGGGCC---GAGAa-CCGCUgGCGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.