miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29448 3' -64.1 NC_006151.1 + 72905 1.09 0.000482
Target:  5'- cAGCCCCCGGCUCUUGGCGACCGCCUCg -3'
miRNA:   3'- -UCGGGGGCCGAGAACCGCUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 69671 0.74 0.170045
Target:  5'- aAGCCCCCGcGCgucagCUgcgccucgccgucgaUGGUGGCCGCCg- -3'
miRNA:   3'- -UCGGGGGC-CGa----GA---------------ACCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 22096 0.73 0.185486
Target:  5'- gGGCCgCCGGUg---GGCcACCGCCUCg -3'
miRNA:   3'- -UCGGgGGCCGagaaCCGcUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 18431 0.73 0.185486
Target:  5'- gGGCCgCCGGCg---GGCGucgcCCGCCUCc -3'
miRNA:   3'- -UCGGgGGCCGagaaCCGCu---GGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 111142 0.73 0.19459
Target:  5'- cGCCCCCGcGCgc---GCGGCCGCCUUu -3'
miRNA:   3'- uCGGGGGC-CGagaacCGCUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 79765 0.73 0.199286
Target:  5'- gGGUCCCCGGUcCacGGCGGCCggaucgcgGCCUCg -3'
miRNA:   3'- -UCGGGGGCCGaGaaCCGCUGG--------CGGAG- -5'
29448 3' -64.1 NC_006151.1 + 37187 0.73 0.204081
Target:  5'- cGGCCCCgCGGCcCUcGGCcuccuCCGCCUCc -3'
miRNA:   3'- -UCGGGG-GCCGaGAaCCGcu---GGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 57506 0.73 0.208976
Target:  5'- cGCgCUCGGCcgCggcggcGGCGGCCGCCUCc -3'
miRNA:   3'- uCGgGGGCCGa-Gaa----CCGCUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 107041 0.72 0.213972
Target:  5'- cGGCCCCUGGCc---GGCGAgccggcCUGCCUCg -3'
miRNA:   3'- -UCGGGGGCCGagaaCCGCU------GGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 50332 0.72 0.213972
Target:  5'- cGGCCgCCCGGCgCcUGGCcGCgGCCUCc -3'
miRNA:   3'- -UCGG-GGGCCGaGaACCGcUGgCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 101825 0.72 0.229577
Target:  5'- cGUCCCCGuCUC--GGCGGCCGCCg- -3'
miRNA:   3'- uCGGGGGCcGAGaaCCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 88715 0.72 0.234989
Target:  5'- cGCCCUCGG-UCUcGGCGuCCGCCg- -3'
miRNA:   3'- uCGGGGGCCgAGAaCCGCuGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 119505 0.72 0.240507
Target:  5'- aGGUCCCCuGCUCgcucuGCGACCgcGCCUCg -3'
miRNA:   3'- -UCGGGGGcCGAGaac--CGCUGG--CGGAG- -5'
29448 3' -64.1 NC_006151.1 + 21453 0.71 0.246133
Target:  5'- uGGCCCCCGGCggcgUGGUc-CCGCgUCg -3'
miRNA:   3'- -UCGGGGGCCGaga-ACCGcuGGCGgAG- -5'
29448 3' -64.1 NC_006151.1 + 105563 0.71 0.251868
Target:  5'- cGCCCUgCGcGCgc-UGGCGGCCGCCUUc -3'
miRNA:   3'- uCGGGG-GC-CGagaACCGCUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 20113 0.71 0.251868
Target:  5'- gGGCgCCCCGGCgacggggCUggggGGCGGgCGCCg- -3'
miRNA:   3'- -UCG-GGGGCCGa------GAa---CCGCUgGCGGag -5'
29448 3' -64.1 NC_006151.1 + 115119 0.71 0.251868
Target:  5'- cGCCgCCGGCgacgCgc-GCGugCGCCUCg -3'
miRNA:   3'- uCGGgGGCCGa---GaacCGCugGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 142325 0.71 0.257712
Target:  5'- gGGCCCgCGcGCUCgcGGCGcCCGCUUUg -3'
miRNA:   3'- -UCGGGgGC-CGAGaaCCGCuGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 56548 0.71 0.257712
Target:  5'- gGGCCCCugcuCGGC-CUgccgGGCGACgCGCCg- -3'
miRNA:   3'- -UCGGGG----GCCGaGAa---CCGCUG-GCGGag -5'
29448 3' -64.1 NC_006151.1 + 109849 0.71 0.269732
Target:  5'- cAGCCCCCGGCg--UGGUucgacgaccuGACgGCgCUCg -3'
miRNA:   3'- -UCGGGGGCCGagaACCG----------CUGgCG-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.