miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29448 3' -64.1 NC_006151.1 + 2226 0.67 0.449076
Target:  5'- cGCCCCCGGCggc-GGCGcggacGCUgGUCUCg -3'
miRNA:   3'- uCGGGGGCCGagaaCCGC-----UGG-CGGAG- -5'
29448 3' -64.1 NC_006151.1 + 3146 0.66 0.531337
Target:  5'- cGCCCUCGGCgggCUcGGCGcagaGCU-CCUCg -3'
miRNA:   3'- uCGGGGGCCGa--GAaCCGC----UGGcGGAG- -5'
29448 3' -64.1 NC_006151.1 + 3591 0.71 0.27591
Target:  5'- gGGCCCCCGGUccUCUUcgucgucgcGGUGGCCGUg-- -3'
miRNA:   3'- -UCGGGGGCCG--AGAA---------CCGCUGGCGgag -5'
29448 3' -64.1 NC_006151.1 + 4857 0.66 0.531337
Target:  5'- gAGUCCCCGGCgccgccguagCggacGCGGCCGUCg- -3'
miRNA:   3'- -UCGGGGGCCGa---------Gaac-CGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 5403 0.66 0.503217
Target:  5'- cGUCCCCGGCga--GGcCGAguCCGuCCUCg -3'
miRNA:   3'- uCGGGGGCCGagaaCC-GCU--GGC-GGAG- -5'
29448 3' -64.1 NC_006151.1 + 6285 0.68 0.390211
Target:  5'- -uUCCUCGGCcgCggcGGCGGCCGCCa- -3'
miRNA:   3'- ucGGGGGCCGa-Gaa-CCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 6774 0.69 0.32942
Target:  5'- uGCaugCCCGGCcCaagaUGGCGGCCGCCg- -3'
miRNA:   3'- uCGg--GGGCCGaGa---ACCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 8320 0.67 0.475764
Target:  5'- gAGCCCCCGGggcgcgcgggcCUCgaucGCGcCCGCCg- -3'
miRNA:   3'- -UCGGGGGCC-----------GAGaac-CGCuGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 10489 0.66 0.521897
Target:  5'- gAGCCgCCCGGCgc---GCGcCCGCCg- -3'
miRNA:   3'- -UCGG-GGGCCGagaacCGCuGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 10522 0.68 0.423236
Target:  5'- cGUCCCCGGC-----GCGGgCGCCUCu -3'
miRNA:   3'- uCGGGGGCCGagaacCGCUgGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 12141 0.67 0.457881
Target:  5'- cGCCCUCGuuccaucaUCUcGGCGuacucGCCGCCUCg -3'
miRNA:   3'- uCGGGGGCcg------AGAaCCGC-----UGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 13197 0.67 0.429186
Target:  5'- gGGCCCgCGGCgccgccaacucgagUCUUGGCacGCUGCCa- -3'
miRNA:   3'- -UCGGGgGCCG--------------AGAACCGc-UGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 18431 0.73 0.185486
Target:  5'- gGGCCgCCGGCg---GGCGucgcCCGCCUCc -3'
miRNA:   3'- -UCGGgGGCCGagaaCCGCu---GGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 20113 0.71 0.251868
Target:  5'- gGGCgCCCCGGCgacggggCUggggGGCGGgCGCCg- -3'
miRNA:   3'- -UCG-GGGGCCGa------GAa---CCGCUgGCGGag -5'
29448 3' -64.1 NC_006151.1 + 21453 0.71 0.246133
Target:  5'- uGGCCCCCGGCggcgUGGUc-CCGCgUCg -3'
miRNA:   3'- -UCGGGGGCCGaga-ACCGcuGGCGgAG- -5'
29448 3' -64.1 NC_006151.1 + 22096 0.73 0.185486
Target:  5'- gGGCCgCCGGUg---GGCcACCGCCUCg -3'
miRNA:   3'- -UCGGgGGCCGagaaCCGcUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 26380 0.66 0.503217
Target:  5'- cGuCCCCCGGCg---GGCGGcguccuucCCGcCCUCc -3'
miRNA:   3'- uC-GGGGGCCGagaaCCGCU--------GGC-GGAG- -5'
29448 3' -64.1 NC_006151.1 + 28116 0.68 0.414823
Target:  5'- cGGCUCCucguCGGCUCggGGCGcGCuccgCGCCUCu -3'
miRNA:   3'- -UCGGGG----GCCGAGaaCCGC-UG----GCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 29078 0.69 0.32942
Target:  5'- gGGCCCCgagaCGGC-CgcGGCGACCGUCcCg -3'
miRNA:   3'- -UCGGGG----GCCGaGaaCCGCUGGCGGaG- -5'
29448 3' -64.1 NC_006151.1 + 32237 0.69 0.343941
Target:  5'- -cCUCCUGGC-CgcGGCGACCGCCg- -3'
miRNA:   3'- ucGGGGGCCGaGaaCCGCUGGCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.