miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29448 3' -64.1 NC_006151.1 + 142325 0.71 0.257712
Target:  5'- gGGCCCgCGcGCUCgcGGCGcCCGCUUUg -3'
miRNA:   3'- -UCGGGgGC-CGAGaaCCGCuGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 141658 0.66 0.521897
Target:  5'- gGGCCCCgCgGGCUCguugUGGaggcauguCUGCCUCc -3'
miRNA:   3'- -UCGGGG-G-CCGAGa---ACCgcu-----GGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 139920 0.66 0.484834
Target:  5'- cGCCgCgGGCUCgucgccgugGGCcGCCGuCCUCg -3'
miRNA:   3'- uCGGgGgCCGAGaa-------CCGcUGGC-GGAG- -5'
29448 3' -64.1 NC_006151.1 + 139293 0.67 0.475764
Target:  5'- cGCCCUCGGCgUCUgcGGCGcgugcugcucgACCGUgCUCg -3'
miRNA:   3'- uCGGGGGCCG-AGAa-CCGC-----------UGGCG-GAG- -5'
29448 3' -64.1 NC_006151.1 + 136826 0.68 0.423236
Target:  5'- cGCCgCgCgGGCUCUgcgacGCGGCCGCCg- -3'
miRNA:   3'- uCGG-G-GgCCGAGAac---CGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 134975 0.68 0.374342
Target:  5'- cAGCCUCCGGgccUUCUcgGGCGGgCGCgUCu -3'
miRNA:   3'- -UCGGGGGCC---GAGAa-CCGCUgGCGgAG- -5'
29448 3' -64.1 NC_006151.1 + 134816 0.67 0.466778
Target:  5'- cGCCggaCCCGGacggUGGCGACCGCg-- -3'
miRNA:   3'- uCGG---GGGCCgagaACCGCUGGCGgag -5'
29448 3' -64.1 NC_006151.1 + 133459 0.66 0.512522
Target:  5'- uGGCCCCggucgaGGCccgCgaGGCGGCCGCg-- -3'
miRNA:   3'- -UCGGGGg-----CCGa--GaaCCGCUGGCGgag -5'
29448 3' -64.1 NC_006151.1 + 131744 0.66 0.484834
Target:  5'- cGGgCCCgGGCga--GGCGACCGUCg- -3'
miRNA:   3'- -UCgGGGgCCGagaaCCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 131508 0.67 0.475764
Target:  5'- gAGCCCCgcgcgggggaaCGGCuggaagcgcugcUCUU-GCGAgCGCCUCg -3'
miRNA:   3'- -UCGGGG-----------GCCG------------AGAAcCGCUgGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 131036 0.69 0.343941
Target:  5'- aGGCCUCCcGCUCgucggGGCcggaGGCCGUCUCc -3'
miRNA:   3'- -UCGGGGGcCGAGaa---CCG----CUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 130542 0.69 0.343941
Target:  5'- cGCCCCCGcGCgag-GGCGGCgCGCUg- -3'
miRNA:   3'- uCGGGGGC-CGagaaCCGCUG-GCGGag -5'
29448 3' -64.1 NC_006151.1 + 128547 0.67 0.449076
Target:  5'- gGGCCCgCCGGCgc--GGUG-CCGCC-Ca -3'
miRNA:   3'- -UCGGG-GGCCGagaaCCGCuGGCGGaG- -5'
29448 3' -64.1 NC_006151.1 + 126028 0.66 0.503217
Target:  5'- aGGgCCUCGGCgacgugGGCG-CCGCCgUCg -3'
miRNA:   3'- -UCgGGGGCCGagaa--CCGCuGGCGG-AG- -5'
29448 3' -64.1 NC_006151.1 + 125208 0.7 0.288604
Target:  5'- gGGCCCCgCGGCcCcc-GCGGCCGCCcgUCg -3'
miRNA:   3'- -UCGGGG-GCCGaGaacCGCUGGCGG--AG- -5'
29448 3' -64.1 NC_006151.1 + 123897 0.68 0.390211
Target:  5'- cGGCCCCgccgugCGGCgc--GGCGgccgugacgcggGCCGCCUCg -3'
miRNA:   3'- -UCGGGG------GCCGagaaCCGC------------UGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 120220 0.66 0.484834
Target:  5'- gAGCCCCCGGCgcgCgaccacgacGGgGACCuggcgcgcgugaGCUUCg -3'
miRNA:   3'- -UCGGGGGCCGa--Gaa-------CCgCUGG------------CGGAG- -5'
29448 3' -64.1 NC_006151.1 + 119505 0.72 0.240507
Target:  5'- aGGUCCCCuGCUCgcucuGCGACCgcGCCUCg -3'
miRNA:   3'- -UCGGGGGcCGAGaac--CGCUGG--CGGAG- -5'
29448 3' -64.1 NC_006151.1 + 119038 0.67 0.475764
Target:  5'- gGGCgCCaaggaCGGCggCgccGCGGCCGCCUCc -3'
miRNA:   3'- -UCG-GGg----GCCGa-GaacCGCUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 115119 0.71 0.251868
Target:  5'- cGCCgCCGGCgacgCgc-GCGugCGCCUCg -3'
miRNA:   3'- uCGGgGGCCGa---GaacCGCugGCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.