miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29448 3' -64.1 NC_006151.1 + 126028 0.66 0.503217
Target:  5'- aGGgCCUCGGCgacgugGGCG-CCGCCgUCg -3'
miRNA:   3'- -UCgGGGGCCGagaa--CCGCuGGCGG-AG- -5'
29448 3' -64.1 NC_006151.1 + 64113 0.66 0.503217
Target:  5'- aGGUCguggCCCGGCgg-UGGCGcgcCCGUCUCg -3'
miRNA:   3'- -UCGG----GGGCCGagaACCGCu--GGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 64844 0.66 0.493987
Target:  5'- uGUCCCCGGCgagggcCUcGGCGgaggGCCGCUg- -3'
miRNA:   3'- uCGGGGGCCGa-----GAaCCGC----UGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 39335 0.66 0.493987
Target:  5'- uGCUCgCGGCUCggcgcGGCGcggcGCCGgCUCa -3'
miRNA:   3'- uCGGGgGCCGAGaa---CCGC----UGGCgGAG- -5'
29448 3' -64.1 NC_006151.1 + 64202 0.66 0.484834
Target:  5'- cGCCCCgGGCaggUCcgGcGUGGgCGCCUCg -3'
miRNA:   3'- uCGGGGgCCG---AGaaC-CGCUgGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 120220 0.66 0.484834
Target:  5'- gAGCCCCCGGCgcgCgaccacgacGGgGACCuggcgcgcgugaGCUUCg -3'
miRNA:   3'- -UCGGGGGCCGa--Gaa-------CCgCUGG------------CGGAG- -5'
29448 3' -64.1 NC_006151.1 + 131744 0.66 0.484834
Target:  5'- cGGgCCCgGGCga--GGCGACCGUCg- -3'
miRNA:   3'- -UCgGGGgCCGagaaCCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 139920 0.66 0.484834
Target:  5'- cGCCgCgGGCUCgucgccgugGGCcGCCGuCCUCg -3'
miRNA:   3'- uCGGgGgCCGAGaa-------CCGcUGGC-GGAG- -5'
29448 3' -64.1 NC_006151.1 + 8320 0.67 0.475764
Target:  5'- gAGCCCCCGGggcgcgcgggcCUCgaucGCGcCCGCCg- -3'
miRNA:   3'- -UCGGGGGCC-----------GAGaac-CGCuGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 119038 0.67 0.475764
Target:  5'- gGGCgCCaaggaCGGCggCgccGCGGCCGCCUCc -3'
miRNA:   3'- -UCG-GGg----GCCGa-GaacCGCUGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 131508 0.67 0.475764
Target:  5'- gAGCCCCgcgcgggggaaCGGCuggaagcgcugcUCUU-GCGAgCGCCUCg -3'
miRNA:   3'- -UCGGGG-----------GCCG------------AGAAcCGCUgGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 139293 0.67 0.475764
Target:  5'- cGCCCUCGGCgUCUgcGGCGcgugcugcucgACCGUgCUCg -3'
miRNA:   3'- uCGGGGGCCG-AGAa-CCGC-----------UGGCG-GAG- -5'
29448 3' -64.1 NC_006151.1 + 134816 0.67 0.466778
Target:  5'- cGCCggaCCCGGacggUGGCGACCGCg-- -3'
miRNA:   3'- uCGG---GGGCCgagaACCGCUGGCGgag -5'
29448 3' -64.1 NC_006151.1 + 65776 0.67 0.457881
Target:  5'- cGCCgCCGGCggCggcgaUGGCG-CCGCC-Cg -3'
miRNA:   3'- uCGGgGGCCGa-Ga----ACCGCuGGCGGaG- -5'
29448 3' -64.1 NC_006151.1 + 12141 0.67 0.457881
Target:  5'- cGCCCUCGuuccaucaUCUcGGCGuacucGCCGCCUCg -3'
miRNA:   3'- uCGGGGGCcg------AGAaCCGC-----UGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 65936 0.67 0.457881
Target:  5'- cGCCgCCGGCccaguccucgUCgaGcGCGGCCGCgUCg -3'
miRNA:   3'- uCGGgGGCCG----------AGaaC-CGCUGGCGgAG- -5'
29448 3' -64.1 NC_006151.1 + 128547 0.67 0.449076
Target:  5'- gGGCCCgCCGGCgc--GGUG-CCGCC-Ca -3'
miRNA:   3'- -UCGGG-GGCCGagaaCCGCuGGCGGaG- -5'
29448 3' -64.1 NC_006151.1 + 113971 0.67 0.449076
Target:  5'- cAGCCCUCGGa-CgaGGUGACCaccgugcgcgGCCUCu -3'
miRNA:   3'- -UCGGGGGCCgaGaaCCGCUGG----------CGGAG- -5'
29448 3' -64.1 NC_006151.1 + 109931 0.67 0.449076
Target:  5'- cGCCgCCGGcCUCUccccugGGCGGCCucgGCCg- -3'
miRNA:   3'- uCGGgGGCC-GAGAa-----CCGCUGG---CGGag -5'
29448 3' -64.1 NC_006151.1 + 2226 0.67 0.449076
Target:  5'- cGCCCCCGGCggc-GGCGcggacGCUgGUCUCg -3'
miRNA:   3'- uCGGGGGCCGagaaCCGC-----UGG-CGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.