miRNA display CGI


Results 41 - 60 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29448 3' -64.1 NC_006151.1 + 128547 0.67 0.449076
Target:  5'- gGGCCCgCCGGCgc--GGUG-CCGCC-Ca -3'
miRNA:   3'- -UCGGG-GGCCGagaaCCGCuGGCGGaG- -5'
29448 3' -64.1 NC_006151.1 + 37874 0.67 0.449076
Target:  5'- cGGaCCCCCGcGC-CggggaGGCGACCGUCg- -3'
miRNA:   3'- -UC-GGGGGC-CGaGaa---CCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 89583 0.67 0.440365
Target:  5'- cGCCCaUgGGCUCgccGGCGGCCGUg-- -3'
miRNA:   3'- uCGGG-GgCCGAGaa-CCGCUGGCGgag -5'
29448 3' -64.1 NC_006151.1 + 52376 0.67 0.440365
Target:  5'- cGCCCCCGGggCccgcgggGGCGgcgggcGCCGCCg- -3'
miRNA:   3'- uCGGGGGCCgaGaa-----CCGC------UGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 13197 0.67 0.429186
Target:  5'- gGGCCCgCGGCgccgccaacucgagUCUUGGCacGCUGCCa- -3'
miRNA:   3'- -UCGGGgGCCG--------------AGAACCGc-UGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 10522 0.68 0.423236
Target:  5'- cGUCCCCGGC-----GCGGgCGCCUCu -3'
miRNA:   3'- uCGGGGGCCGagaacCGCUgGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 38278 0.68 0.423236
Target:  5'- uGGCCgcggCCCGGCUCgccgaGGCCGCCg- -3'
miRNA:   3'- -UCGG----GGGCCGAGaaccgCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 136826 0.68 0.423236
Target:  5'- cGCCgCgCgGGCUCUgcgacGCGGCCGCCg- -3'
miRNA:   3'- uCGG-G-GgCCGAGAac---CGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 81900 0.68 0.414823
Target:  5'- aGGCgCgCCGG-UCgcGGCGcGCCGCCUCg -3'
miRNA:   3'- -UCGgG-GGCCgAGaaCCGC-UGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 28116 0.68 0.414823
Target:  5'- cGGCUCCucguCGGCUCggGGCGcGCuccgCGCCUCu -3'
miRNA:   3'- -UCGGGG----GCCGAGaaCCGC-UG----GCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 86194 0.68 0.406513
Target:  5'- uGCCCCCGGCg---GGCccGCUGCCcaUCa -3'
miRNA:   3'- uCGGGGGCCGagaaCCGc-UGGCGG--AG- -5'
29448 3' -64.1 NC_006151.1 + 87460 0.68 0.406513
Target:  5'- cGCCCCCgcuccGGCUCcagcagcGGCaGCCGCCg- -3'
miRNA:   3'- uCGGGGG-----CCGAGaa-----CCGcUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 35959 0.68 0.406513
Target:  5'- cAGCCa---GCUCcUGGCGGCCGCCg- -3'
miRNA:   3'- -UCGGgggcCGAGaACCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 112584 0.68 0.390211
Target:  5'- cGCCCgCgGGCUUcgUGGaGGCCGCCg- -3'
miRNA:   3'- uCGGG-GgCCGAGa-ACCgCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 6285 0.68 0.390211
Target:  5'- -uUCCUCGGCcgCggcGGCGGCCGCCa- -3'
miRNA:   3'- ucGGGGGCCGa-Gaa-CCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 94859 0.68 0.390211
Target:  5'- aAGCCCUCGcuGCUCUcGGUGACCuGCgaCg -3'
miRNA:   3'- -UCGGGGGC--CGAGAaCCGCUGG-CGgaG- -5'
29448 3' -64.1 NC_006151.1 + 123897 0.68 0.390211
Target:  5'- cGGCCCCgccgugCGGCgc--GGCGgccgugacgcggGCCGCCUCg -3'
miRNA:   3'- -UCGGGG------GCCGagaaCCGC------------UGGCGGAG- -5'
29448 3' -64.1 NC_006151.1 + 101744 0.68 0.382222
Target:  5'- uGCCgCCGGaccc-GGCGGCCGCCg- -3'
miRNA:   3'- uCGGgGGCCgagaaCCGCUGGCGGag -5'
29448 3' -64.1 NC_006151.1 + 134975 0.68 0.374342
Target:  5'- cAGCCUCCGGgccUUCUcgGGCGGgCGCgUCu -3'
miRNA:   3'- -UCGGGGGCC---GAGAa-CCGCUgGCGgAG- -5'
29448 3' -64.1 NC_006151.1 + 76804 0.69 0.366573
Target:  5'- cAGCgCCCCGGCgagggcgggcgCguagUGGCGGcCCGCgUCc -3'
miRNA:   3'- -UCG-GGGGCCGa----------Ga---ACCGCU-GGCGgAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.