miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29448 5' -50.1 NC_006151.1 + 72939 1.11 0.006616
Target:  5'- gUGAAGAACUUGAAGCAGGGGCUGUAGg -3'
miRNA:   3'- -ACUUCUUGAACUUCGUCCCCGACAUC- -5'
29448 5' -50.1 NC_006151.1 + 113694 0.77 0.6324
Target:  5'- cGAGGGGCgcgUGu-GCGGGGaGCUGUGGa -3'
miRNA:   3'- aCUUCUUGa--ACuuCGUCCC-CGACAUC- -5'
29448 5' -50.1 NC_006151.1 + 80031 0.73 0.835609
Target:  5'- cGAucgGGGACggggGAGGCGGGagucuGGCUGUGGg -3'
miRNA:   3'- aCU---UCUUGaa--CUUCGUCC-----CCGACAUC- -5'
29448 5' -50.1 NC_006151.1 + 29665 0.72 0.852696
Target:  5'- aGGAGGAaggGggGgGGGGGCgggGUGGg -3'
miRNA:   3'- aCUUCUUgaaCuuCgUCCCCGa--CAUC- -5'
29448 5' -50.1 NC_006151.1 + 66916 0.72 0.860906
Target:  5'- aGGAGGGCcacgaugGAGGCGGGGGCg--AGg -3'
miRNA:   3'- aCUUCUUGaa-----CUUCGUCCCCGacaUC- -5'
29448 5' -50.1 NC_006151.1 + 32978 0.71 0.905071
Target:  5'- gGGAGAGCgcgagagUGAGGCuguuGGCUGUGGg -3'
miRNA:   3'- aCUUCUUGa------ACUUCGucc-CCGACAUC- -5'
29448 5' -50.1 NC_006151.1 + 33324 0.7 0.934709
Target:  5'- gGAccGGGACagGggGCGGGGGCg--GGg -3'
miRNA:   3'- aCU--UCUUGaaCuuCGUCCCCGacaUC- -5'
29448 5' -50.1 NC_006151.1 + 26286 0.7 0.934709
Target:  5'- gGgcGGACggUGggGUGGGGGggGUGGg -3'
miRNA:   3'- aCuuCUUGa-ACuuCGUCCCCgaCAUC- -5'
29448 5' -50.1 NC_006151.1 + 3164 0.69 0.949281
Target:  5'- cGcAGAGCUccucgUGggGCAGcGGGUcGUAGa -3'
miRNA:   3'- aCuUCUUGA-----ACuuCGUC-CCCGaCAUC- -5'
29448 5' -50.1 NC_006151.1 + 12399 0.69 0.961511
Target:  5'- aGAgcgGGAAC-UGGAGaGGGGGCUGggugGGg -3'
miRNA:   3'- aCU---UCUUGaACUUCgUCCCCGACa---UC- -5'
29448 5' -50.1 NC_006151.1 + 19233 0.68 0.968746
Target:  5'- aGAAGAGCUgcgagugGAAGCcgagcgcguggaagcGGGGCUcGUGGc -3'
miRNA:   3'- aCUUCUUGAa------CUUCGu--------------CCCCGA-CAUC- -5'
29448 5' -50.1 NC_006151.1 + 27554 0.68 0.971528
Target:  5'- gGggGGGCUgggcUGGGaCGGGGGCcggGUGGg -3'
miRNA:   3'- aCuuCUUGA----ACUUcGUCCCCGa--CAUC- -5'
29448 5' -50.1 NC_006151.1 + 3814 0.68 0.974406
Target:  5'- cUGGAGcugGACUUGGugcuGGC-GGGGCUGgAGg -3'
miRNA:   3'- -ACUUC---UUGAACU----UCGuCCCCGACaUC- -5'
29448 5' -50.1 NC_006151.1 + 141457 0.68 0.974406
Target:  5'- aGGAGGGCggucUGGAGcCGGGGGCg---- -3'
miRNA:   3'- aCUUCUUGa---ACUUC-GUCCCCGacauc -5'
29448 5' -50.1 NC_006151.1 + 44781 0.68 0.977067
Target:  5'- -aGAGAGCggggaGAAGCGGGGGgUGa-- -3'
miRNA:   3'- acUUCUUGaa---CUUCGUCCCCgACauc -5'
29448 5' -50.1 NC_006151.1 + 20132 0.68 0.977067
Target:  5'- cUGggGGGCgggcGccGCGGGGGCggcgcGUGGa -3'
miRNA:   3'- -ACuuCUUGaa--CuuCGUCCCCGa----CAUC- -5'
29448 5' -50.1 NC_006151.1 + 105020 0.67 0.981769
Target:  5'- gGAGGAGCUggUGAcGCAGGcGGCg---- -3'
miRNA:   3'- aCUUCUUGA--ACUuCGUCC-CCGacauc -5'
29448 5' -50.1 NC_006151.1 + 96095 0.67 0.981769
Target:  5'- cGAAGAGCaUG-AGC-GGGGUUGcGGg -3'
miRNA:   3'- aCUUCUUGaACuUCGuCCCCGACaUC- -5'
29448 5' -50.1 NC_006151.1 + 49523 0.67 0.983829
Target:  5'- cGGAGGACgaggagGggGgAGGGGg-GUGGg -3'
miRNA:   3'- aCUUCUUGaa----CuuCgUCCCCgaCAUC- -5'
29448 5' -50.1 NC_006151.1 + 9550 0.67 0.987415
Target:  5'- aGAAGAAacgggGAAGCGGGGGaaGg-- -3'
miRNA:   3'- aCUUCUUgaa--CUUCGUCCCCgaCauc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.