Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29448 | 5' | -50.1 | NC_006151.1 | + | 45030 | 0.67 | 0.987415 |
Target: 5'- aGAAgcGAAUggggGAAGCguGGGGGgUGUGGg -3' miRNA: 3'- aCUU--CUUGaa--CUUCG--UCCCCgACAUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 110656 | 0.67 | 0.988052 |
Target: 5'- gGggGGACUUGggGgGauuGGGGCccaaagacgcggcgGUGGg -3' miRNA: 3'- aCuuCUUGAACuuCgU---CCCCGa-------------CAUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 27301 | 0.67 | 0.988513 |
Target: 5'- uUGggGGGCgugGggGUcgaggcgggggacgGGGGGCUGc-- -3' miRNA: 3'- -ACuuCUUGaa-CuuCG--------------UCCCCGACauc -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 143066 | 0.67 | 0.988961 |
Target: 5'- gUGggGGAUUggGGuuGGCAGGGuGCcaggGUAGg -3' miRNA: 3'- -ACuuCUUGAa-CU--UCGUCCC-CGa---CAUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 34396 | 0.66 | 0.990354 |
Target: 5'- aGAGGggUgggGGAGaggaGGGGGUggGUGGg -3' miRNA: 3'- aCUUCuuGaa-CUUCg---UCCCCGa-CAUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 27009 | 0.66 | 0.991606 |
Target: 5'- -cGAGAGC-UGGAGCAGGGcCUGc-- -3' miRNA: 3'- acUUCUUGaACUUCGUCCCcGACauc -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 88868 | 0.66 | 0.992725 |
Target: 5'- -cGGGAGCUccgGgcGCGGGGGCUcGUc- -3' miRNA: 3'- acUUCUUGAa--CuuCGUCCCCGA-CAuc -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 143101 | 0.66 | 0.993722 |
Target: 5'- aGggGGAUUggGGuuGGCAGGGaGCcaagGUAGg -3' miRNA: 3'- aCuuCUUGAa-CU--UCGUCCC-CGa---CAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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