Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29448 | 5' | -50.1 | NC_006151.1 | + | 88868 | 0.66 | 0.992725 |
|
Target: 5'- -cGGGAGCUccgGgcGCGGGGGCUcGUc- -3' miRNA: 3'- acUUCUUGAa--CuuCGUCCCCGA-CAuc -5' |
|||||||
| 29448 | 5' | -50.1 | NC_006151.1 | + | 96095 | 0.67 | 0.981769 |
|
Target: 5'- cGAAGAGCaUG-AGC-GGGGUUGcGGg -3' miRNA: 3'- aCUUCUUGaACuUCGuCCCCGACaUC- -5' |
|||||||
| 29448 | 5' | -50.1 | NC_006151.1 | + | 105020 | 0.67 | 0.981769 |
|
Target: 5'- gGAGGAGCUggUGAcGCAGGcGGCg---- -3' miRNA: 3'- aCUUCUUGA--ACUuCGUCC-CCGacauc -5' |
|||||||
| 29448 | 5' | -50.1 | NC_006151.1 | + | 110656 | 0.67 | 0.988052 |
|
Target: 5'- gGggGGACUUGggGgGauuGGGGCccaaagacgcggcgGUGGg -3' miRNA: 3'- aCuuCUUGAACuuCgU---CCCCGa-------------CAUC- -5' |
|||||||
| 29448 | 5' | -50.1 | NC_006151.1 | + | 113694 | 0.77 | 0.6324 |
|
Target: 5'- cGAGGGGCgcgUGu-GCGGGGaGCUGUGGa -3' miRNA: 3'- aCUUCUUGa--ACuuCGUCCC-CGACAUC- -5' |
|||||||
| 29448 | 5' | -50.1 | NC_006151.1 | + | 141457 | 0.68 | 0.974406 |
|
Target: 5'- aGGAGGGCggucUGGAGcCGGGGGCg---- -3' miRNA: 3'- aCUUCUUGa---ACUUC-GUCCCCGacauc -5' |
|||||||
| 29448 | 5' | -50.1 | NC_006151.1 | + | 143066 | 0.67 | 0.988961 |
|
Target: 5'- gUGggGGAUUggGGuuGGCAGGGuGCcaggGUAGg -3' miRNA: 3'- -ACuuCUUGAa-CU--UCGUCCC-CGa---CAUC- -5' |
|||||||
| 29448 | 5' | -50.1 | NC_006151.1 | + | 143101 | 0.66 | 0.993722 |
|
Target: 5'- aGggGGAUUggGGuuGGCAGGGaGCcaagGUAGg -3' miRNA: 3'- aCuuCUUGAa-CU--UCGUCCC-CGa---CAUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home