Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29448 | 5' | -50.1 | NC_006151.1 | + | 143101 | 0.66 | 0.993722 |
Target: 5'- aGggGGAUUggGGuuGGCAGGGaGCcaagGUAGg -3' miRNA: 3'- aCuuCUUGAa-CU--UCGUCCC-CGa---CAUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 143066 | 0.67 | 0.988961 |
Target: 5'- gUGggGGAUUggGGuuGGCAGGGuGCcaggGUAGg -3' miRNA: 3'- -ACuuCUUGAa-CU--UCGUCCC-CGa---CAUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 141457 | 0.68 | 0.974406 |
Target: 5'- aGGAGGGCggucUGGAGcCGGGGGCg---- -3' miRNA: 3'- aCUUCUUGa---ACUUC-GUCCCCGacauc -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 113694 | 0.77 | 0.6324 |
Target: 5'- cGAGGGGCgcgUGu-GCGGGGaGCUGUGGa -3' miRNA: 3'- aCUUCUUGa--ACuuCGUCCC-CGACAUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 110656 | 0.67 | 0.988052 |
Target: 5'- gGggGGACUUGggGgGauuGGGGCccaaagacgcggcgGUGGg -3' miRNA: 3'- aCuuCUUGAACuuCgU---CCCCGa-------------CAUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 105020 | 0.67 | 0.981769 |
Target: 5'- gGAGGAGCUggUGAcGCAGGcGGCg---- -3' miRNA: 3'- aCUUCUUGA--ACUuCGUCC-CCGacauc -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 96095 | 0.67 | 0.981769 |
Target: 5'- cGAAGAGCaUG-AGC-GGGGUUGcGGg -3' miRNA: 3'- aCUUCUUGaACuUCGuCCCCGACaUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 88868 | 0.66 | 0.992725 |
Target: 5'- -cGGGAGCUccgGgcGCGGGGGCUcGUc- -3' miRNA: 3'- acUUCUUGAa--CuuCGUCCCCGA-CAuc -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 80031 | 0.73 | 0.835609 |
Target: 5'- cGAucgGGGACggggGAGGCGGGagucuGGCUGUGGg -3' miRNA: 3'- aCU---UCUUGaa--CUUCGUCC-----CCGACAUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 72939 | 1.11 | 0.006616 |
Target: 5'- gUGAAGAACUUGAAGCAGGGGCUGUAGg -3' miRNA: 3'- -ACUUCUUGAACUUCGUCCCCGACAUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 66916 | 0.72 | 0.860906 |
Target: 5'- aGGAGGGCcacgaugGAGGCGGGGGCg--AGg -3' miRNA: 3'- aCUUCUUGaa-----CUUCGUCCCCGacaUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 49523 | 0.67 | 0.983829 |
Target: 5'- cGGAGGACgaggagGggGgAGGGGg-GUGGg -3' miRNA: 3'- aCUUCUUGaa----CuuCgUCCCCgaCAUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 45030 | 0.67 | 0.987415 |
Target: 5'- aGAAgcGAAUggggGAAGCguGGGGGgUGUGGg -3' miRNA: 3'- aCUU--CUUGaa--CUUCG--UCCCCgACAUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 44781 | 0.68 | 0.977067 |
Target: 5'- -aGAGAGCggggaGAAGCGGGGGgUGa-- -3' miRNA: 3'- acUUCUUGaa---CUUCGUCCCCgACauc -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 34396 | 0.66 | 0.990354 |
Target: 5'- aGAGGggUgggGGAGaggaGGGGGUggGUGGg -3' miRNA: 3'- aCUUCuuGaa-CUUCg---UCCCCGa-CAUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 33324 | 0.7 | 0.934709 |
Target: 5'- gGAccGGGACagGggGCGGGGGCg--GGg -3' miRNA: 3'- aCU--UCUUGaaCuuCGUCCCCGacaUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 32978 | 0.71 | 0.905071 |
Target: 5'- gGGAGAGCgcgagagUGAGGCuguuGGCUGUGGg -3' miRNA: 3'- aCUUCUUGa------ACUUCGucc-CCGACAUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 29665 | 0.72 | 0.852696 |
Target: 5'- aGGAGGAaggGggGgGGGGGCgggGUGGg -3' miRNA: 3'- aCUUCUUgaaCuuCgUCCCCGa--CAUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 27554 | 0.68 | 0.971528 |
Target: 5'- gGggGGGCUgggcUGGGaCGGGGGCcggGUGGg -3' miRNA: 3'- aCuuCUUGA----ACUUcGUCCCCGa--CAUC- -5' |
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29448 | 5' | -50.1 | NC_006151.1 | + | 27301 | 0.67 | 0.988513 |
Target: 5'- uUGggGGGCgugGggGUcgaggcgggggacgGGGGGCUGc-- -3' miRNA: 3'- -ACuuCUUGaa-CuuCG--------------UCCCCGACauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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