miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 3' -56.9 NC_006151.1 + 36810 0.69 0.716007
Target:  5'- cCGUCgCCGucGAGACcgucGCC-CGCGGCCCc -3'
miRNA:   3'- -GCAGaGGU--CUUUG----UGGuGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 37165 0.78 0.257805
Target:  5'- cCGUCUCCGccGGCGCCcgcCGCGGCCCc -3'
miRNA:   3'- -GCAGAGGUcuUUGUGGu--GCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 37523 0.66 0.859253
Target:  5'- --aCUCgaGGAAGCAgCACGaGGCCCUc -3'
miRNA:   3'- gcaGAGg-UCUUUGUgGUGCgCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 38288 0.74 0.422109
Target:  5'- cCGgCUCgCcGAGGcCGCCGCGCGGCCCg -3'
miRNA:   3'- -GCaGAG-GuCUUU-GUGGUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 38509 0.66 0.843566
Target:  5'- --cCUCCGGcuACGCCAgcucccccgcCGcCGGCCCg -3'
miRNA:   3'- gcaGAGGUCuuUGUGGU----------GC-GCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 38558 0.66 0.866794
Target:  5'- gCGgcgCaagaAGAAGCGCCGCGCgcccggGGCCCg -3'
miRNA:   3'- -GCagaGg---UCUUUGUGGUGCG------CCGGGa -5'
29449 3' -56.9 NC_006151.1 + 38842 0.67 0.801148
Target:  5'- gCGUCccggCCGgcGAGAC-CCAcacgcCGCGGCCCUc -3'
miRNA:   3'- -GCAGa---GGU--CUUUGuGGU-----GCGCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 39777 0.74 0.413387
Target:  5'- cCGcCUUCGG--GCACCGCGCGGCCa- -3'
miRNA:   3'- -GCaGAGGUCuuUGUGGUGCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 39837 0.68 0.773815
Target:  5'- uCGUCUCCugcggccgccGGGGccuCGCCGagcucCGCGGCCCc -3'
miRNA:   3'- -GCAGAGG----------UCUUu--GUGGU-----GCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 42572 0.7 0.635274
Target:  5'- -cUCUCCG---GCGCCACGCGccGCCCg -3'
miRNA:   3'- gcAGAGGUcuuUGUGGUGCGC--CGGGa -5'
29449 3' -56.9 NC_006151.1 + 46672 0.69 0.706071
Target:  5'- --aCUCCGGAGGCGCCAUcguccggcgaGgGGUCCUc -3'
miRNA:   3'- gcaGAGGUCUUUGUGGUG----------CgCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 50365 0.75 0.391237
Target:  5'- gCGUCUCCGccggcgggggcGAGACGCgggccccgcgguccuCGCGCGGCCCc -3'
miRNA:   3'- -GCAGAGGU-----------CUUUGUG---------------GUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 50978 0.66 0.843566
Target:  5'- gGUCUCUcuuuccGCGCaCGCGCGGCCg- -3'
miRNA:   3'- gCAGAGGucuu--UGUG-GUGCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 52085 0.68 0.761606
Target:  5'- cCGUCUgCAGcGccgucgagagcagcGCGCCGCGCaGCCCc -3'
miRNA:   3'- -GCAGAgGUCuU--------------UGUGGUGCGcCGGGa -5'
29449 3' -56.9 NC_006151.1 + 52169 0.69 0.686022
Target:  5'- gCGUCUCgaAGGGcgcGCGCgcgaACGCGGCCCc -3'
miRNA:   3'- -GCAGAGg-UCUU---UGUGg---UGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 54610 0.68 0.764441
Target:  5'- gGUC-CCGGu-GCGCCGgGCGcGCCCc -3'
miRNA:   3'- gCAGaGGUCuuUGUGGUgCGC-CGGGa -5'
29449 3' -56.9 NC_006151.1 + 55607 0.72 0.544365
Target:  5'- aGUCggaCguGGAGCGCCucuCGCGGCUCUg -3'
miRNA:   3'- gCAGa--GguCUUUGUGGu--GCGCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 57247 0.66 0.874127
Target:  5'- gCGg--CCuc-GGCGuCCGCGCGGCCCUc -3'
miRNA:   3'- -GCagaGGucuUUGU-GGUGCGCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 57460 0.75 0.387899
Target:  5'- gCGUCggCCAGGugccGCGCCGCgGCGGCCUc -3'
miRNA:   3'- -GCAGa-GGUCUu---UGUGGUG-CGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 58555 0.66 0.843566
Target:  5'- uCGUCUCCucuu-CGCCGcCGCcGCCCg -3'
miRNA:   3'- -GCAGAGGucuuuGUGGU-GCGcCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.