miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 3' -56.9 NC_006151.1 + 4384 0.69 0.734683
Target:  5'- uCGcCUCCccggcgcGGggGucCGCgGCGCGGCCCg -3'
miRNA:   3'- -GCaGAGG-------UCuuU--GUGgUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 5381 0.67 0.835434
Target:  5'- uGUCUCUgcGGggGCGCCcCGCcGUCCc -3'
miRNA:   3'- gCAGAGG--UCuuUGUGGuGCGcCGGGa -5'
29449 3' -56.9 NC_006151.1 + 5510 0.69 0.716007
Target:  5'- aCGgggCUCCGG--GCGCCAaGCGGCCg- -3'
miRNA:   3'- -GCa--GAGGUCuuUGUGGUgCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 6543 0.66 0.880542
Target:  5'- aGUCUUCAGAGuccGCGCCGgaGCGGagacggucggaucCCCUc -3'
miRNA:   3'- gCAGAGGUCUU---UGUGGUg-CGCC-------------GGGA- -5'
29449 3' -56.9 NC_006151.1 + 8953 0.66 0.874127
Target:  5'- gGUC-CCGGuccCACgCGCGCGcGCCCc -3'
miRNA:   3'- gCAGaGGUCuuuGUG-GUGCGC-CGGGa -5'
29449 3' -56.9 NC_006151.1 + 9055 0.72 0.544365
Target:  5'- gCGUgCUCCGGggGCGCCGgC-CGGCCa- -3'
miRNA:   3'- -GCA-GAGGUCuuUGUGGU-GcGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 10308 0.66 0.859253
Target:  5'- gCGUCcCCGGcguCAUCACGCGGgaCCCc -3'
miRNA:   3'- -GCAGaGGUCuuuGUGGUGCGCC--GGGa -5'
29449 3' -56.9 NC_006151.1 + 13990 0.66 0.866794
Target:  5'- gCGUC-CCcGggGC-CCACGUgugaGGCCCc -3'
miRNA:   3'- -GCAGaGGuCuuUGuGGUGCG----CCGGGa -5'
29449 3' -56.9 NC_006151.1 + 15885 0.69 0.725873
Target:  5'- cCGcCcgCCGGGGgacgcGCGCCccgACGCGGCCCg -3'
miRNA:   3'- -GCaGa-GGUCUU-----UGUGG---UGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 17315 0.66 0.874127
Target:  5'- cCGUCcgCCgGGggGCGCCGCGuCaGCUCg -3'
miRNA:   3'- -GCAGa-GG-UCuuUGUGGUGC-GcCGGGa -5'
29449 3' -56.9 NC_006151.1 + 17952 0.69 0.723906
Target:  5'- gCGUCUCCGGcgcccgccugccGGCGucCCACGCGGCgCa -3'
miRNA:   3'- -GCAGAGGUCu-----------UUGU--GGUGCGCCGgGa -5'
29449 3' -56.9 NC_006151.1 + 19498 0.73 0.458071
Target:  5'- cCG-CUCCGGGgccucgggGACGCagGCGCGGCCCa -3'
miRNA:   3'- -GCaGAGGUCU--------UUGUGg-UGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 24404 0.66 0.859253
Target:  5'- gCGUCUCgAaGAGCACCACcccCGcGCCCc -3'
miRNA:   3'- -GCAGAGgUcUUUGUGGUGc--GC-CGGGa -5'
29449 3' -56.9 NC_006151.1 + 24521 0.67 0.827118
Target:  5'- gCGcCgCCAcGuuGCAgCGCGCGGCCCc -3'
miRNA:   3'- -GCaGaGGU-CuuUGUgGUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 27160 0.67 0.809967
Target:  5'- aCGUCggcCCcGAGGCGCCGCGUgucggGGCgCCa -3'
miRNA:   3'- -GCAGa--GGuCUUUGUGGUGCG-----CCG-GGa -5'
29449 3' -56.9 NC_006151.1 + 28595 0.7 0.675926
Target:  5'- gCGUCcCCGGAGGCggguGCCGCGgGGUUCg -3'
miRNA:   3'- -GCAGaGGUCUUUG----UGGUGCgCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 28876 0.7 0.675926
Target:  5'- gCGUCcCCGGAGGCggguGCCGCGgGGUUCg -3'
miRNA:   3'- -GCAGaGGUCUUUG----UGGUGCgCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 32562 0.75 0.387899
Target:  5'- cCGUCUCCc-GGGCACC-CGCGGCCg- -3'
miRNA:   3'- -GCAGAGGucUUUGUGGuGCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 34008 0.66 0.866794
Target:  5'- gCGUC-CCGGc-GCGCCgGCcCGGCCCUc -3'
miRNA:   3'- -GCAGaGGUCuuUGUGG-UGcGCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 34062 0.72 0.524649
Target:  5'- uCGUCUCCcGGAGCGCCccCGgGGUCCc -3'
miRNA:   3'- -GCAGAGGuCUUUGUGGu-GCgCCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.