miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 3' -56.9 NC_006151.1 + 72404 1.07 0.003082
Target:  5'- gCGUCUCCAGAAACACCACGCGGCCCUc -3'
miRNA:   3'- -GCAGAGGUCUUUGUGGUGCGCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 37165 0.78 0.257805
Target:  5'- cCGUCUCCGccGGCGCCcgcCGCGGCCCc -3'
miRNA:   3'- -GCAGAGGUcuUUGUGGu--GCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 109529 0.78 0.276733
Target:  5'- cCGUCUcagcagcgccccCCGGAGGCGCCguggACGUGGCCCg -3'
miRNA:   3'- -GCAGA------------GGUCUUUGUGG----UGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 32562 0.75 0.387899
Target:  5'- cCGUCUCCc-GGGCACC-CGCGGCCg- -3'
miRNA:   3'- -GCAGAGGucUUUGUGGuGCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 57460 0.75 0.387899
Target:  5'- gCGUCggCCAGGugccGCGCCGCgGCGGCCUc -3'
miRNA:   3'- -GCAGa-GGUCUu---UGUGGUG-CGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 50365 0.75 0.391237
Target:  5'- gCGUCUCCGccggcgggggcGAGACGCgggccccgcgguccuCGCGCGGCCCc -3'
miRNA:   3'- -GCAGAGGU-----------CUUUGUG---------------GUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 124278 0.75 0.39628
Target:  5'- uCGUCacgaccguguggUCCGGGAGCACgUACGCGGCCa- -3'
miRNA:   3'- -GCAG------------AGGUCUUUGUG-GUGCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 87350 0.75 0.404776
Target:  5'- gGcCUCCAGG---GCCugGCGGCCCc -3'
miRNA:   3'- gCaGAGGUCUuugUGGugCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 39777 0.74 0.413387
Target:  5'- cCGcCUUCGG--GCACCGCGCGGCCa- -3'
miRNA:   3'- -GCaGAGGUCuuUGUGGUGCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 38288 0.74 0.422109
Target:  5'- cCGgCUCgCcGAGGcCGCCGCGCGGCCCg -3'
miRNA:   3'- -GCaGAG-GuCUUU-GUGGUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 19498 0.73 0.458071
Target:  5'- cCG-CUCCGGGgccucgggGACGCagGCGCGGCCCa -3'
miRNA:   3'- -GCaGAGGUCU--------UUGUGg-UGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 102529 0.73 0.48514
Target:  5'- gCGUCUacgaCCAGAcggugguGGCGCgCGCGCGGgCCCUg -3'
miRNA:   3'- -GCAGA----GGUCU-------UUGUG-GUGCGCC-GGGA- -5'
29449 3' -56.9 NC_006151.1 + 34062 0.72 0.524649
Target:  5'- uCGUCUCCcGGAGCGCCccCGgGGUCCc -3'
miRNA:   3'- -GCAGAGGuCUUUGUGGu-GCgCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 66538 0.72 0.534475
Target:  5'- gCGcUCUUCGGggGCG-CGCGCGGCCg- -3'
miRNA:   3'- -GC-AGAGGUCuuUGUgGUGCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 114150 0.72 0.534475
Target:  5'- gCGgCUCgGGcgcAGCgACCGCGCGGCCCUc -3'
miRNA:   3'- -GCaGAGgUCu--UUG-UGGUGCGCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 9055 0.72 0.544365
Target:  5'- gCGUgCUCCGGggGCGCCGgC-CGGCCa- -3'
miRNA:   3'- -GCA-GAGGUCuuUGUGGU-GcGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 55607 0.72 0.544365
Target:  5'- aGUCggaCguGGAGCGCCucuCGCGGCUCUg -3'
miRNA:   3'- gCAGa--GguCUUUGUGGu--GCGCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 75573 0.72 0.554314
Target:  5'- gGcCUCgAGGAACACCAgGCGGUCg- -3'
miRNA:   3'- gCaGAGgUCUUUGUGGUgCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 71739 0.72 0.563313
Target:  5'- gCGcCUCgaacacgCAGAAGCGCCGCGCguGGUCCUg -3'
miRNA:   3'- -GCaGAG-------GUCUUUGUGGUGCG--CCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 67649 0.72 0.564316
Target:  5'- aCGgcgUCCAGGAACAgCACGCggaagaGGCCCg -3'
miRNA:   3'- -GCag-AGGUCUUUGUgGUGCG------CCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.