miRNA display CGI


Results 21 - 40 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 5' -62.9 NC_006151.1 + 8117 0.69 0.438673
Target:  5'- -gGGGGUCGgagcGCGGA-CCCCgcccggugGGGGGGCg -3'
miRNA:   3'- cgUCCCGGC----UGUCUaGGGG--------CCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 8164 0.72 0.261093
Target:  5'- gGCGGGGCCcaaaauggaccucgGGCcGGGaCCCCGGGGGcGCu -3'
miRNA:   3'- -CGUCCCGG--------------CUG-UCUaGGGGCCCCC-UG- -5'
29449 5' -62.9 NC_006151.1 + 8249 0.71 0.342739
Target:  5'- gGCcGGGCCGGCgcgccgGGAcgcccCUCCGGGGGAa -3'
miRNA:   3'- -CGuCCCGGCUG------UCUa----GGGGCCCCCUg -5'
29449 5' -62.9 NC_006151.1 + 8360 0.66 0.606239
Target:  5'- cGCGGaGGCgCGAgGcccccgcCCCCGGGGGGg -3'
miRNA:   3'- -CGUC-CCG-GCUgUcua----GGGGCCCCCUg -5'
29449 5' -62.9 NC_006151.1 + 9692 0.7 0.372983
Target:  5'- cGCccGGCCG-CGGGUgCCCGGGaGACg -3'
miRNA:   3'- -CGucCCGGCuGUCUAgGGGCCCcCUG- -5'
29449 5' -62.9 NC_006151.1 + 11032 0.66 0.596488
Target:  5'- cGCcGGGCCGGCcggccGGGggCCCGGccuGGACg -3'
miRNA:   3'- -CGuCCCGGCUG-----UCUagGGGCCc--CCUG- -5'
29449 5' -62.9 NC_006151.1 + 13421 0.67 0.557786
Target:  5'- aGCcGGGCCcGC--GUCCCCGGGGcccGCa -3'
miRNA:   3'- -CGuCCCGGcUGucUAGGGGCCCCc--UG- -5'
29449 5' -62.9 NC_006151.1 + 13943 0.66 0.577065
Target:  5'- -gGGGGCgGGCg---CCCCG-GGGACg -3'
miRNA:   3'- cgUCCCGgCUGucuaGGGGCcCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 13980 0.66 0.586762
Target:  5'- aGCcGGGCCcGC--GUCCCCGGGGcccACg -3'
miRNA:   3'- -CGuCCCGGcUGucUAGGGGCCCCc--UG- -5'
29449 5' -62.9 NC_006151.1 + 15867 0.66 0.616007
Target:  5'- aGgAGGGCgGGaAGGacgccgcCCgCCGGGGGACg -3'
miRNA:   3'- -CgUCCCGgCUgUCUa------GG-GGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 17163 0.66 0.600386
Target:  5'- cGCAGaGGUCGGCGGcgCCCaGGauccacagguggaucGGGGCc -3'
miRNA:   3'- -CGUC-CCGGCUGUCuaGGGgCC---------------CCCUG- -5'
29449 5' -62.9 NC_006151.1 + 17279 0.67 0.533009
Target:  5'- gGC-GGGCUGAuacggaggggcucccCGGGcuucgagccgUCCgCCGGGGGGCg -3'
miRNA:   3'- -CGuCCCGGCU---------------GUCU----------AGG-GGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 17420 0.66 0.596488
Target:  5'- aGCAGGGCCaGC-GAg--CCGGGGG-Cg -3'
miRNA:   3'- -CGUCCCGGcUGuCUaggGGCCCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 18057 0.67 0.557786
Target:  5'- aGCGGGGagCG--GGGUCCCUuGGGGGCc -3'
miRNA:   3'- -CGUCCCg-GCugUCUAGGGGcCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 19092 0.66 0.605263
Target:  5'- uGCAGGGCuCGuacacguaguacaGCAGGcaCCgCGGGGGcGCg -3'
miRNA:   3'- -CGUCCCG-GC-------------UGUCUa-GGgGCCCCC-UG- -5'
29449 5' -62.9 NC_006151.1 + 20126 0.68 0.456105
Target:  5'- aCGGGGCUGGgGGGcgggCgCCGcGGGGGCg -3'
miRNA:   3'- cGUCCCGGCUgUCUa---GgGGC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 20451 0.77 0.141314
Target:  5'- aGCGGGGCUcggggguGGCGccGGUCCCCcgGGGGGGCg -3'
miRNA:   3'- -CGUCCCGG-------CUGU--CUAGGGG--CCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 21083 0.68 0.473902
Target:  5'- uCAGGGCgGcgaGGAggagCCCCGcGGGGAg -3'
miRNA:   3'- cGUCCCGgCug-UCUa---GGGGC-CCCCUg -5'
29449 5' -62.9 NC_006151.1 + 21399 0.66 0.567405
Target:  5'- gGCGGGGCgaaggggcggugCGGCGucucGggCCUCGGGGGuCg -3'
miRNA:   3'- -CGUCCCG------------GCUGU----CuaGGGGCCCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 22204 0.68 0.464959
Target:  5'- cGCGGGGCCGACgaAGGg---CGaGGGGACc -3'
miRNA:   3'- -CGUCCCGGCUG--UCUagggGC-CCCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.