miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 5' -62.9 NC_006151.1 + 1746 0.66 0.616007
Target:  5'- cGCAGccaccuccGGCCGGgGGAUCCgCGcGGaGGAg -3'
miRNA:   3'- -CGUC--------CCGGCUgUCUAGGgGC-CC-CCUg -5'
29449 5' -62.9 NC_006151.1 + 1803 0.67 0.548214
Target:  5'- --cGGGCCGgggagGCAGG-CgCCGGGGaGGCa -3'
miRNA:   3'- cguCCCGGC-----UGUCUaGgGGCCCC-CUG- -5'
29449 5' -62.9 NC_006151.1 + 1978 0.67 0.556826
Target:  5'- -aGGGGCCGgagagucagaGCAGAgUCCggccgggCCGaGGGGGCg -3'
miRNA:   3'- cgUCCCGGC----------UGUCU-AGG-------GGC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 2115 0.66 0.567405
Target:  5'- cGCGGGGCCGGCc-GUCgCCGccgcGGACg -3'
miRNA:   3'- -CGUCCCGGCUGucUAGgGGCcc--CCUG- -5'
29449 5' -62.9 NC_006151.1 + 2174 0.66 0.616007
Target:  5'- cCGGGGCCGGCcccggcgcccgAGGcCCCCGcGGGcCg -3'
miRNA:   3'- cGUCCCGGCUG-----------UCUaGGGGCcCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 2276 0.72 0.28132
Target:  5'- aGCAcGGCCGGCGGGgcgCCCgCGGcGGcGACg -3'
miRNA:   3'- -CGUcCCGGCUGUCUa--GGG-GCC-CC-CUG- -5'
29449 5' -62.9 NC_006151.1 + 2367 0.69 0.419107
Target:  5'- cGCAGaaggcgcgcaacucGGCCGGCAGGcCCUCGGGGccGCg -3'
miRNA:   3'- -CGUC--------------CCGGCUGUCUaGGGGCCCCc-UG- -5'
29449 5' -62.9 NC_006151.1 + 3139 0.68 0.482025
Target:  5'- cGCGGGGCgcccuCGGCGGGcucggcgcagagcUCCUCGuGGGGCa -3'
miRNA:   3'- -CGUCCCG-----GCUGUCU-------------AGGGGCcCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 3614 0.71 0.314304
Target:  5'- cGCGGuGGCCGugGccGUCCCCGcGGaGGGCc -3'
miRNA:   3'- -CGUC-CCGGCugUc-UAGGGGC-CC-CCUG- -5'
29449 5' -62.9 NC_006151.1 + 3679 0.66 0.577065
Target:  5'- cCGGGG-CGGCGGG-CCCCGGGcGcGCg -3'
miRNA:   3'- cGUCCCgGCUGUCUaGGGGCCC-CcUG- -5'
29449 5' -62.9 NC_006151.1 + 3834 0.67 0.548214
Target:  5'- gGCGGGGCUGG-AGggCCcggagCCGGGGaGGCc -3'
miRNA:   3'- -CGUCCCGGCUgUCuaGG-----GGCCCC-CUG- -5'
29449 5' -62.9 NC_006151.1 + 4370 0.67 0.529231
Target:  5'- -gAGGGCCucGACGGucgccUCCCCGGcgcGGGGg -3'
miRNA:   3'- cgUCCCGG--CUGUCu----AGGGGCC---CCCUg -5'
29449 5' -62.9 NC_006151.1 + 4521 0.68 0.447342
Target:  5'- gGCAGGGCCcagaGCGGGUCCUgGGcGGccauGGCg -3'
miRNA:   3'- -CGUCCCGGc---UGUCUAGGGgCC-CC----CUG- -5'
29449 5' -62.9 NC_006151.1 + 5009 0.68 0.447342
Target:  5'- cGCgGGGGCCgGGCGGG-CUCCGGGgccgGGGCc -3'
miRNA:   3'- -CG-UCCCGG-CUGUCUaGGGGCCC----CCUG- -5'
29449 5' -62.9 NC_006151.1 + 5084 0.72 0.30077
Target:  5'- cGCGGGGCCGcgGCGGG-CgCCGGcGGaGACg -3'
miRNA:   3'- -CGUCCCGGC--UGUCUaGgGGCC-CC-CUG- -5'
29449 5' -62.9 NC_006151.1 + 5245 0.77 0.138214
Target:  5'- cGCGGcGG-CGGCGGGggCCCGGGGGGCg -3'
miRNA:   3'- -CGUC-CCgGCUGUCUagGGGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 5364 0.72 0.262882
Target:  5'- cGCGGcGCCGGCGGGgcugUCUCUGcGGGGGCg -3'
miRNA:   3'- -CGUCcCGGCUGUCU----AGGGGC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 5762 0.7 0.380822
Target:  5'- cCGGGcucaCCGAcCGGGUCCCCccucgcGGGGGACc -3'
miRNA:   3'- cGUCCc---GGCU-GUCUAGGGG------CCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 5817 0.67 0.510495
Target:  5'- -aGGGGCCGGgAGAgCCggaggaggaggCCGGGGaGGCu -3'
miRNA:   3'- cgUCCCGGCUgUCUaGG-----------GGCCCC-CUG- -5'
29449 5' -62.9 NC_006151.1 + 5978 0.66 0.616007
Target:  5'- uGCucGGaGCCuGAUGGAgagCCcgaCCGGGGGACc -3'
miRNA:   3'- -CGu-CC-CGG-CUGUCUa--GG---GGCCCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.