miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 5' -62.9 NC_006151.1 + 72439 1.1 0.000529
Target:  5'- uGCAGGGCCGACAGAUCCCCGGGGGACa -3'
miRNA:   3'- -CGUCCCGGCUGUCUAGGGGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 129180 0.79 0.098416
Target:  5'- cGCAGGGCCGccacggccgccgucaGCAccUCCCCGGGGGcCg -3'
miRNA:   3'- -CGUCCCGGC---------------UGUcuAGGGGCCCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 5245 0.77 0.138214
Target:  5'- cGCGGcGG-CGGCGGGggCCCGGGGGGCg -3'
miRNA:   3'- -CGUC-CCgGCUGUCUagGGGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 20451 0.77 0.141314
Target:  5'- aGCGGGGCUcggggguGGCGccGGUCCCCcgGGGGGGCg -3'
miRNA:   3'- -CGUCCCGG-------CUGU--CUAGGGG--CCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 98014 0.75 0.180695
Target:  5'- gGCGGcGCCGGcCAGGUCCgCGGGGuGGCg -3'
miRNA:   3'- -CGUCcCGGCU-GUCUAGGgGCCCC-CUG- -5'
29449 5' -62.9 NC_006151.1 + 130679 0.74 0.19882
Target:  5'- cGCGGGGCgCGGCgcaGGAUgUCCGGGGGcCc -3'
miRNA:   3'- -CGUCCCG-GCUG---UCUAgGGGCCCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 112072 0.74 0.208464
Target:  5'- gGUGGGGCUGGUGGAgcUCCCCGGGucGGGCg -3'
miRNA:   3'- -CGUCCCGGCUGUCU--AGGGGCCC--CCUG- -5'
29449 5' -62.9 NC_006151.1 + 45459 0.74 0.213436
Target:  5'- cGCGGGGCggCGACGGA-CCCaggggugagagCGGGGGAUc -3'
miRNA:   3'- -CGUCCCG--GCUGUCUaGGG-----------GCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 122937 0.73 0.245437
Target:  5'- cGCGGacGCCGACGGcggcgCCgCGGGGGGCg -3'
miRNA:   3'- -CGUCc-CGGCUGUCua---GGgGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 29234 0.73 0.251143
Target:  5'- cGCcGGGUCGGCcGcgCCCCGaGGGACa -3'
miRNA:   3'- -CGuCCCGGCUGuCuaGGGGCcCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 8164 0.72 0.261093
Target:  5'- gGCGGGGCCcaaaauggaccucgGGCcGGGaCCCCGGGGGcGCu -3'
miRNA:   3'- -CGUCCCGG--------------CUG-UCUaGGGGCCCCC-UG- -5'
29449 5' -62.9 NC_006151.1 + 101212 0.72 0.262284
Target:  5'- cGCgAGGGCCaggcgugGACGGggCCCgGcGGGGGCa -3'
miRNA:   3'- -CG-UCCCGG-------CUGUCuaGGGgC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 5364 0.72 0.262882
Target:  5'- cGCGGcGCCGGCGGGgcugUCUCUGcGGGGGCg -3'
miRNA:   3'- -CGUCcCGGCUGUCU----AGGGGC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 32845 0.72 0.265282
Target:  5'- aGgGGGGCCGGCGGGgauggggaagaaggCCCgacccgcgCGGGGGGCc -3'
miRNA:   3'- -CgUCCCGGCUGUCUa-------------GGG--------GCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 2276 0.72 0.28132
Target:  5'- aGCAcGGCCGGCGGGgcgCCCgCGGcGGcGACg -3'
miRNA:   3'- -CGUcCCGGCUGUCUa--GGG-GCC-CC-CUG- -5'
29449 5' -62.9 NC_006151.1 + 135087 0.72 0.287691
Target:  5'- gGCGGGGgCGGCGGGg--CCGGGcGGGCg -3'
miRNA:   3'- -CGUCCCgGCUGUCUaggGGCCC-CCUG- -5'
29449 5' -62.9 NC_006151.1 + 129317 0.72 0.287691
Target:  5'- gGCGGaGGCagaGGCGGGUuagcggCCCCGGGGcGGCc -3'
miRNA:   3'- -CGUC-CCGg--CUGUCUA------GGGGCCCC-CUG- -5'
29449 5' -62.9 NC_006151.1 + 83323 0.72 0.296799
Target:  5'- cGCAGGGCCGugaGCAGGcgcgcguccacgugcUCCCCGGcgcgcgcgcGGGCg -3'
miRNA:   3'- -CGUCCCGGC---UGUCU---------------AGGGGCCc--------CCUG- -5'
29449 5' -62.9 NC_006151.1 + 60407 0.72 0.300106
Target:  5'- -gAGGGCgCGcACGGcccagcggcccacGUCCUCGGGGGGCc -3'
miRNA:   3'- cgUCCCG-GC-UGUC-------------UAGGGGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 5084 0.72 0.30077
Target:  5'- cGCGGGGCCGcgGCGGG-CgCCGGcGGaGACg -3'
miRNA:   3'- -CGUCCCGGC--UGUCUaGgGGCC-CC-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.