miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29455 3' -56.6 NC_006151.1 + 64576 1.09 0.002422
Target:  5'- cGACGAGCAGGUCGUGCACGUACGCCAg -3'
miRNA:   3'- -CUGCUCGUCCAGCACGUGCAUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 138724 0.82 0.142627
Target:  5'- cGCGcGCGGGUCGUGUACGcGCGCCGc -3'
miRNA:   3'- cUGCuCGUCCAGCACGUGCaUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 68069 0.77 0.298763
Target:  5'- cGACGGGCAGGUCG-GCGgGcaGCGCCu -3'
miRNA:   3'- -CUGCUCGUCCAGCaCGUgCa-UGCGGu -5'
29455 3' -56.6 NC_006151.1 + 91750 0.77 0.305758
Target:  5'- gGGCGAGCGGGcUCGgGCGggcggUGUGCGCCAg -3'
miRNA:   3'- -CUGCUCGUCC-AGCaCGU-----GCAUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 100048 0.77 0.320122
Target:  5'- cACGAGCugcacgGGGUCGUGCGCGcggcCGCCGa -3'
miRNA:   3'- cUGCUCG------UCCAGCACGUGCau--GCGGU- -5'
29455 3' -56.6 NC_006151.1 + 74609 0.76 0.350349
Target:  5'- aGGCGccGCAGGgCGUGCACGUGCuCCAg -3'
miRNA:   3'- -CUGCu-CGUCCaGCACGUGCAUGcGGU- -5'
29455 3' -56.6 NC_006151.1 + 106402 0.75 0.382551
Target:  5'- cGACGGGCAGG-CGcuguucacgcUGCGCGU-CGCCGa -3'
miRNA:   3'- -CUGCUCGUCCaGC----------ACGUGCAuGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 99139 0.74 0.461807
Target:  5'- cGGgGcGCAGGcCGUGCACGUGgcCGCCGc -3'
miRNA:   3'- -CUgCuCGUCCaGCACGUGCAU--GCGGU- -5'
29455 3' -56.6 NC_006151.1 + 44844 0.73 0.471144
Target:  5'- gGGCGAGCgGGGUCGUGgAgGggggGCGCCc -3'
miRNA:   3'- -CUGCUCG-UCCAGCACgUgCa---UGCGGu -5'
29455 3' -56.6 NC_006151.1 + 133737 0.73 0.490098
Target:  5'- uGGCGAGCgagugGGGUCGgGCGCGUGCGg-- -3'
miRNA:   3'- -CUGCUCG-----UCCAGCaCGUGCAUGCggu -5'
29455 3' -56.6 NC_006151.1 + 110895 0.73 0.513298
Target:  5'- cACGAGguGcuuGUCGUGCGCGUGCcgcagguucacgaggGCCAg -3'
miRNA:   3'- cUGCUCguC---CAGCACGUGCAUG---------------CGGU- -5'
29455 3' -56.6 NC_006151.1 + 75602 0.72 0.51917
Target:  5'- cGACGAcgAGGUCGgcgcGCACGcGCGCCGa -3'
miRNA:   3'- -CUGCUcgUCCAGCa---CGUGCaUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 81164 0.72 0.529013
Target:  5'- cACGAGCGGGUUG-GCgAUGUccACGCCGc -3'
miRNA:   3'- cUGCUCGUCCAGCaCG-UGCA--UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 117057 0.72 0.53793
Target:  5'- -cUGGGCAGGUCGUggucgagcagcagGCGCGUggucgcguccACGCCGg -3'
miRNA:   3'- cuGCUCGUCCAGCA-------------CGUGCA----------UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 3983 0.72 0.558928
Target:  5'- cGGCGAGCcGGcCGcgGcCACGUugGCCGg -3'
miRNA:   3'- -CUGCUCGuCCaGCa-C-GUGCAugCGGU- -5'
29455 3' -56.6 NC_006151.1 + 55384 0.71 0.579135
Target:  5'- cGCGAGCAGGagGUGCG---GCGCCu -3'
miRNA:   3'- cUGCUCGUCCagCACGUgcaUGCGGu -5'
29455 3' -56.6 NC_006151.1 + 50651 0.71 0.5893
Target:  5'- cGCGGGCGGacccgaGUCGUGCGCGgccgcacccccGCGCCGc -3'
miRNA:   3'- cUGCUCGUC------CAGCACGUGCa----------UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 74353 0.71 0.599495
Target:  5'- cACGGGCcGGUUGUGCACcaGgcCGCCGc -3'
miRNA:   3'- cUGCUCGuCCAGCACGUG--CauGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 70110 0.71 0.61995
Target:  5'- cGCGAGCGGGUCcacGCcCGcGCGCCGc -3'
miRNA:   3'- cUGCUCGUCCAGca-CGuGCaUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 58117 0.71 0.630195
Target:  5'- aGACGGGCGGGgucgCGUcgcccGCGcCGUACGCg- -3'
miRNA:   3'- -CUGCUCGUCCa---GCA-----CGU-GCAUGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.