miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29455 3' -56.6 NC_006151.1 + 3253 0.68 0.7699
Target:  5'- cGGCgGAGCGGGgcgccgCGgcgcgcgGCgAUGUGCGCCAg -3'
miRNA:   3'- -CUG-CUCGUCCa-----GCa------CG-UGCAUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 3983 0.72 0.558928
Target:  5'- cGGCGAGCcGGcCGcgGcCACGUugGCCGg -3'
miRNA:   3'- -CUGCUCGuCCaGCa-C-GUGCAugCGGU- -5'
29455 3' -56.6 NC_006151.1 + 11690 0.67 0.815261
Target:  5'- cGACGGggccGCGGGaCG-GCGCGUGCGgCGc -3'
miRNA:   3'- -CUGCU----CGUCCaGCaCGUGCAUGCgGU- -5'
29455 3' -56.6 NC_006151.1 + 17699 0.68 0.788476
Target:  5'- aGACGAGgaAGGcugcugUGUGCGCccggGUGCGCCGg -3'
miRNA:   3'- -CUGCUCg-UCCa-----GCACGUG----CAUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 20328 0.68 0.7699
Target:  5'- cGGCGAGCAGGacgCGcGaCACG-ACGCUg -3'
miRNA:   3'- -CUGCUCGUCCa--GCaC-GUGCaUGCGGu -5'
29455 3' -56.6 NC_006151.1 + 20999 0.66 0.871575
Target:  5'- gGACGGcGCugccGGcgaCGUGCACGcugACGCCGg -3'
miRNA:   3'- -CUGCU-CGu---CCa--GCACGUGCa--UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 21486 0.66 0.885822
Target:  5'- -uCGGGCAGG-CGgccgggggGCGCGgGCGUCAc -3'
miRNA:   3'- cuGCUCGUCCaGCa-------CGUGCaUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 22291 0.68 0.750832
Target:  5'- cGCGGGCAcGG-CGUcCACGUccGCGCCGa -3'
miRNA:   3'- cUGCUCGU-CCaGCAcGUGCA--UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 23884 0.68 0.779254
Target:  5'- gGGCGAGCGGGUucaCGgGCugG-GCGUCGg -3'
miRNA:   3'- -CUGCUCGUCCA---GCaCGugCaUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 42964 0.68 0.788476
Target:  5'- ----cGCGGGUCGUGUGCGUGUGCgAg -3'
miRNA:   3'- cugcuCGUCCAGCACGUGCAUGCGgU- -5'
29455 3' -56.6 NC_006151.1 + 44844 0.73 0.471144
Target:  5'- gGGCGAGCgGGGUCGUGgAgGggggGCGCCc -3'
miRNA:   3'- -CUGCUCG-UCCAGCACgUgCa---UGCGGu -5'
29455 3' -56.6 NC_006151.1 + 45174 0.66 0.888565
Target:  5'- gGACGGGguGG-CGUGCccgccaccacggacgGCGacggggUGCGCCGc -3'
miRNA:   3'- -CUGCUCguCCaGCACG---------------UGC------AUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 49491 0.67 0.815261
Target:  5'- gGACuGAGuCGGG-CGUGCGCGcacacCGCCGg -3'
miRNA:   3'- -CUG-CUC-GUCCaGCACGUGCau---GCGGU- -5'
29455 3' -56.6 NC_006151.1 + 50162 0.67 0.832298
Target:  5'- cGACGAGC-GGaCGaGCGCGgccggccGCGCCGg -3'
miRNA:   3'- -CUGCUCGuCCaGCaCGUGCa------UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 50651 0.71 0.5893
Target:  5'- cGCGGGCGGacccgaGUCGUGCGCGgccgcacccccGCGCCGc -3'
miRNA:   3'- cUGCUCGUC------CAGCACGUGCa----------UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 51401 0.69 0.731344
Target:  5'- gGGCGAGCGcGUCGcaGCGCGUGCacccguccgugGCCAu -3'
miRNA:   3'- -CUGCUCGUcCAGCa-CGUGCAUG-----------CGGU- -5'
29455 3' -56.6 NC_006151.1 + 51597 0.68 0.750832
Target:  5'- gGACG-GCGGGUCaguacacgauGUGCACc-GCGCCGu -3'
miRNA:   3'- -CUGCuCGUCCAG----------CACGUGcaUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 51983 0.67 0.814391
Target:  5'- aGGCGAGCAgcuccgcggugccGG-CGUGCAgCuUGCGCCGc -3'
miRNA:   3'- -CUGCUCGU-------------CCaGCACGU-GcAUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 53335 0.7 0.68128
Target:  5'- aGACGAGCAcGGg-GcGCGCGcGCGCCGc -3'
miRNA:   3'- -CUGCUCGU-CCagCaCGUGCaUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 54664 0.67 0.823867
Target:  5'- gGACGAGCAcgaccuGGcCGggcaccUGCGCGU-CGCCGg -3'
miRNA:   3'- -CUGCUCGU------CCaGC------ACGUGCAuGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.