miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29455 3' -56.6 NC_006151.1 + 141624 0.69 0.69141
Target:  5'- gGAuCGGGCGGGUCGcUGCcGCGgcgGCGCg- -3'
miRNA:   3'- -CU-GCUCGUCCAGC-ACG-UGCa--UGCGgu -5'
29455 3' -56.6 NC_006151.1 + 141314 0.67 0.806488
Target:  5'- cGCGGGCGGGUcCGggaugGUcaccGCGUACGCgGg -3'
miRNA:   3'- cUGCUCGUCCA-GCa----CG----UGCAUGCGgU- -5'
29455 3' -56.6 NC_006151.1 + 140286 0.7 0.660908
Target:  5'- cGACGAGC---UCGUGCGCcgGCGCCGc -3'
miRNA:   3'- -CUGCUCGuccAGCACGUGcaUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 139831 0.69 0.711513
Target:  5'- cACGcGCGGGUCG-GCGCGacccGCGUCAa -3'
miRNA:   3'- cUGCuCGUCCAGCaCGUGCa---UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 138724 0.82 0.142627
Target:  5'- cGCGcGCGGGUCGUGUACGcGCGCCGc -3'
miRNA:   3'- cUGCuCGUCCAGCACGUGCaUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 136456 0.69 0.711513
Target:  5'- cGACGAGCg---CGUGCGCGccgaccGCGCCGa -3'
miRNA:   3'- -CUGCUCGuccaGCACGUGCa-----UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 133737 0.73 0.490098
Target:  5'- uGGCGAGCgagugGGGUCGgGCGCGUGCGg-- -3'
miRNA:   3'- -CUGCUCG-----UCCAGCaCGUGCAUGCggu -5'
29455 3' -56.6 NC_006151.1 + 131843 0.68 0.797557
Target:  5'- uGAUGAGCGGGgCG-GCcgagACGcGCGCCGg -3'
miRNA:   3'- -CUGCUCGUCCaGCaCG----UGCaUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 131481 0.66 0.878808
Target:  5'- cACGAGCAcGUCcUGCAgGUGCaCCAg -3'
miRNA:   3'- cUGCUCGUcCAGcACGUgCAUGcGGU- -5'
29455 3' -56.6 NC_006151.1 + 130122 0.66 0.878808
Target:  5'- -cCGGGUucuGGcCGUGgGCGcGCGCCAg -3'
miRNA:   3'- cuGCUCGu--CCaGCACgUGCaUGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 129110 0.67 0.806488
Target:  5'- cACGAGCgccaGGGcCGagGCGCGcuggGCGCCAa -3'
miRNA:   3'- cUGCUCG----UCCaGCa-CGUGCa---UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 127331 0.68 0.794848
Target:  5'- cGCGGGCGGGg-GUGCugGUAcacguggucggucuCGCCc -3'
miRNA:   3'- cUGCUCGUCCagCACGugCAU--------------GCGGu -5'
29455 3' -56.6 NC_006151.1 + 127287 0.7 0.660908
Target:  5'- uGACGGGuCGGGg-GUGCugGUACagGCCGu -3'
miRNA:   3'- -CUGCUC-GUCCagCACGugCAUG--CGGU- -5'
29455 3' -56.6 NC_006151.1 + 121914 0.66 0.864126
Target:  5'- cGCGGGCcgagGGGgaccgCGUGCugGggGCGCUg -3'
miRNA:   3'- cUGCUCG----UCCa----GCACGugCa-UGCGGu -5'
29455 3' -56.6 NC_006151.1 + 119849 0.66 0.885822
Target:  5'- -uCGAGCAGGcggcggaccgcuUCGUGCGC--ACGCUc -3'
miRNA:   3'- cuGCUCGUCC------------AGCACGUGcaUGCGGu -5'
29455 3' -56.6 NC_006151.1 + 117250 0.67 0.840547
Target:  5'- cGGCGGGCccgaggcgcGGGcCGcGCGCGgcCGCCGc -3'
miRNA:   3'- -CUGCUCG---------UCCaGCaCGUGCauGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 117057 0.72 0.53793
Target:  5'- -cUGGGCAGGUCGUggucgagcagcagGCGCGUggucgcguccACGCCGg -3'
miRNA:   3'- cuGCUCGUCCAGCA-------------CGUGCA----------UGCGGU- -5'
29455 3' -56.6 NC_006151.1 + 115579 0.69 0.695449
Target:  5'- cGCGGGCAGGUCGcgcucgagcagcucGCGCGUG-GCCc -3'
miRNA:   3'- cUGCUCGUCCAGCa-------------CGUGCAUgCGGu -5'
29455 3' -56.6 NC_006151.1 + 115260 0.69 0.69141
Target:  5'- --aGAGCAGGUCcaccaggcgGcGCGCGUACGCg- -3'
miRNA:   3'- cugCUCGUCCAG---------CaCGUGCAUGCGgu -5'
29455 3' -56.6 NC_006151.1 + 110895 0.73 0.513298
Target:  5'- cACGAGguGcuuGUCGUGCGCGUGCcgcagguucacgaggGCCAg -3'
miRNA:   3'- cUGCUCguC---CAGCACGUGCAUG---------------CGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.