miRNA display CGI


Results 41 - 60 of 667 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29455 5' -70 NC_006151.1 + 67732 0.66 0.326892
Target:  5'- cGCGGCGCacaggcacgGCGCgG-CGGCCccguCGGGg -3'
miRNA:   3'- uCGCCGCGg--------CGCGgCgGCCGGc---GCCC- -5'
29455 5' -70 NC_006151.1 + 107481 0.66 0.326892
Target:  5'- cAGCGcGCuGCCGCugcccccgucGCCGCCGGUCGa--- -3'
miRNA:   3'- -UCGC-CG-CGGCG----------CGGCGGCCGGCgccc -5'
29455 5' -70 NC_006151.1 + 132843 0.66 0.326892
Target:  5'- -aCGGCcaccaCGgGCgGCCGGCC-CGGGg -3'
miRNA:   3'- ucGCCGcg---GCgCGgCGGCCGGcGCCC- -5'
29455 5' -70 NC_006151.1 + 3910 0.66 0.326218
Target:  5'- aGGCcgGGCuGCuCGgGCCagagcgggggcagGCCGGgCGCGGGc -3'
miRNA:   3'- -UCG--CCG-CG-GCgCGG-------------CGGCCgGCGCCC- -5'
29455 5' -70 NC_006151.1 + 84174 0.66 0.326218
Target:  5'- -uCGGCGCgccuccuCGcCGCCGCCGuGCCccCGGGc -3'
miRNA:   3'- ucGCCGCG-------GC-GCGGCGGC-CGGc-GCCC- -5'
29455 5' -70 NC_006151.1 + 129503 0.66 0.325545
Target:  5'- cGCGGgcgcgaugacgaGCCGCuuGCCGCCgacgggggGGCC-CGGGg -3'
miRNA:   3'- uCGCCg-----------CGGCG--CGGCGG--------CCGGcGCCC- -5'
29455 5' -70 NC_006151.1 + 52011 0.66 0.322864
Target:  5'- cAGCuuGCGCCGCGCCagcuccucggcgaagGCCGGCgccguCGCGu- -3'
miRNA:   3'- -UCGc-CGCGGCGCGG---------------CGGCCG-----GCGCcc -5'
29455 5' -70 NC_006151.1 + 120804 0.66 0.322196
Target:  5'- gAGC-GCGCCGCGCgcgaggugcuggacgCGCCGcGCgacgacaCGUGGGu -3'
miRNA:   3'- -UCGcCGCGGCGCG---------------GCGGC-CG-------GCGCCC- -5'
29455 5' -70 NC_006151.1 + 134173 0.66 0.320199
Target:  5'- aGGUGGCGCUGC-CCaCCGGauaCGCGa- -3'
miRNA:   3'- -UCGCCGCGGCGcGGcGGCCg--GCGCcc -5'
29455 5' -70 NC_006151.1 + 133564 0.66 0.320199
Target:  5'- aGGaCGGCGCCGaccgguaggagaaGCCGUCgucauagucgucguaGGCCGaGGGg -3'
miRNA:   3'- -UC-GCCGCGGCg------------CGGCGG---------------CCGGCgCCC- -5'
29455 5' -70 NC_006151.1 + 132123 0.66 0.320199
Target:  5'- gAGCGGCagGCCcaGCuCgCGCCGGCgGUGGu -3'
miRNA:   3'- -UCGCCG--CGG--CGcG-GCGGCCGgCGCCc -5'
29455 5' -70 NC_006151.1 + 108129 0.66 0.320199
Target:  5'- cAGCcccCGUCGUcccaaccgGCCGCCaaGCCGCGGGg -3'
miRNA:   3'- -UCGcc-GCGGCG--------CGGCGGc-CGGCGCCC- -5'
29455 5' -70 NC_006151.1 + 85050 0.66 0.320199
Target:  5'- gGGCGuGaCGaCCacgGCGCUGCaGGCCuGCGGGc -3'
miRNA:   3'- -UCGC-C-GC-GG---CGCGGCGgCCGG-CGCCC- -5'
29455 5' -70 NC_006151.1 + 4396 0.66 0.320199
Target:  5'- cGCGGgGguCCGCGgCG-CGGCC-CGGGu -3'
miRNA:   3'- uCGCCgC--GGCGCgGCgGCCGGcGCCC- -5'
29455 5' -70 NC_006151.1 + 8239 0.66 0.320199
Target:  5'- cGGCGGgGa-GgGCCggGCCGGCgCGcCGGGa -3'
miRNA:   3'- -UCGCCgCggCgCGG--CGGCCG-GC-GCCC- -5'
29455 5' -70 NC_006151.1 + 18701 0.66 0.320199
Target:  5'- gGGCGGCGCCgGCGUCGUgacGCCGUc-- -3'
miRNA:   3'- -UCGCCGCGG-CGCGGCGgc-CGGCGccc -5'
29455 5' -70 NC_006151.1 + 91291 0.66 0.320199
Target:  5'- cGC-GCGCCGCGUCaGCa-GCCGCgccGGGa -3'
miRNA:   3'- uCGcCGCGGCGCGG-CGgcCGGCG---CCC- -5'
29455 5' -70 NC_006151.1 + 107034 0.66 0.320199
Target:  5'- cGCGGCGCgGCcCCugGCCGGCgaGCcGGc -3'
miRNA:   3'- uCGCCGCGgCGcGG--CGGCCGg-CGcCC- -5'
29455 5' -70 NC_006151.1 + 127548 0.66 0.320199
Target:  5'- aGGgGGCGUCGUcgucguggccGCCGCCGGCgccucguuCGCcguccccgucGGGg -3'
miRNA:   3'- -UCgCCGCGGCG----------CGGCGGCCG--------GCG----------CCC- -5'
29455 5' -70 NC_006151.1 + 81544 0.66 0.320199
Target:  5'- nGGCGcGCuCCGCGgUGCacauGGCCGUGGu -3'
miRNA:   3'- -UCGC-CGcGGCGCgGCGg---CCGGCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.