miRNA display CGI


Results 21 - 40 of 667 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29455 5' -70 NC_006151.1 + 116994 0.66 0.338507
Target:  5'- cGCuGGUGCCGCaGCaccacgcgcuccccCGCgGGCC-CGGGc -3'
miRNA:   3'- uCG-CCGCGGCG-CG--------------GCGgCCGGcGCCC- -5'
29455 5' -70 NC_006151.1 + 57590 0.66 0.333688
Target:  5'- --aGGCGCaCGUgaccagGCCGgccUCGGCCGCGGc -3'
miRNA:   3'- ucgCCGCG-GCG------CGGC---GGCCGGCGCCc -5'
29455 5' -70 NC_006151.1 + 73039 0.66 0.333688
Target:  5'- uGGCGGUGgCGCGgUGggGGUgCGCGGGg -3'
miRNA:   3'- -UCGCCGCgGCGCgGCggCCG-GCGCCC- -5'
29455 5' -70 NC_006151.1 + 85344 0.66 0.333688
Target:  5'- cAGCGuGCucGCCGCGCUGgCGcGCCugcGCGuGGu -3'
miRNA:   3'- -UCGC-CG--CGGCGCGGCgGC-CGG---CGC-CC- -5'
29455 5' -70 NC_006151.1 + 92559 0.66 0.333688
Target:  5'- cAGCaGGUgGCCGaGUCGCUggagGGCCGCGaGGu -3'
miRNA:   3'- -UCG-CCG-CGGCgCGGCGG----CCGGCGC-CC- -5'
29455 5' -70 NC_006151.1 + 97384 0.66 0.333688
Target:  5'- cGGgGGCGUCG-GCCucguCCGuGCCGUGGa -3'
miRNA:   3'- -UCgCCGCGGCgCGGc---GGC-CGGCGCCc -5'
29455 5' -70 NC_006151.1 + 4082 0.66 0.333688
Target:  5'- cAGCGGCGCCaCGgUGCgGGCgaCGaGGGc -3'
miRNA:   3'- -UCGCCGCGGcGCgGCGgCCG--GCgCCC- -5'
29455 5' -70 NC_006151.1 + 38619 0.66 0.333688
Target:  5'- gAGgGGCucuCCgGCGCgGCCcuCCGCGGGg -3'
miRNA:   3'- -UCgCCGc--GG-CGCGgCGGccGGCGCCC- -5'
29455 5' -70 NC_006151.1 + 55232 0.66 0.333688
Target:  5'- -aCGGCGCCgGCGCgcaGCCGG-UGCaGGa -3'
miRNA:   3'- ucGCCGCGG-CGCGg--CGGCCgGCGcCC- -5'
29455 5' -70 NC_006151.1 + 75452 0.66 0.333688
Target:  5'- cGUGGCGCgCGUaGCgGUCGGCgGCcGGc -3'
miRNA:   3'- uCGCCGCG-GCG-CGgCGGCCGgCGcCC- -5'
29455 5' -70 NC_006151.1 + 75610 0.66 0.333688
Target:  5'- aGGuCGGCGCgcaCGCG-CGCCGaGCCcaCGGGc -3'
miRNA:   3'- -UC-GCCGCG---GCGCgGCGGC-CGGc-GCCC- -5'
29455 5' -70 NC_006151.1 + 65964 0.66 0.333004
Target:  5'- nGCcGCGUCGUcgaGCCgguccucGCCGGCCGCGa- -3'
miRNA:   3'- uCGcCGCGGCG---CGG-------CGGCCGGCGCcc -5'
29455 5' -70 NC_006151.1 + 55878 0.66 0.331639
Target:  5'- cGCGGCGCUGuCGCggcggacgugCGCCGGgcgaccgagcggcuCCGCGauGGa -3'
miRNA:   3'- uCGCCGCGGC-GCG----------GCGGCC--------------GGCGC--CC- -5'
29455 5' -70 NC_006151.1 + 104968 0.66 0.327567
Target:  5'- uGCgGGUGaCGcCGCCGCCGGCCucgcucaacaucgacCGGGc -3'
miRNA:   3'- uCG-CCGCgGC-GCGGCGGCCGGc--------------GCCC- -5'
29455 5' -70 NC_006151.1 + 107481 0.66 0.326892
Target:  5'- cAGCGcGCuGCCGCugcccccgucGCCGCCGGUCGa--- -3'
miRNA:   3'- -UCGC-CG-CGGCG----------CGGCGGCCGGCgccc -5'
29455 5' -70 NC_006151.1 + 67732 0.66 0.326892
Target:  5'- cGCGGCGCacaggcacgGCGCgG-CGGCCccguCGGGg -3'
miRNA:   3'- uCGCCGCGg--------CGCGgCgGCCGGc---GCCC- -5'
29455 5' -70 NC_006151.1 + 42840 0.66 0.326892
Target:  5'- gGGUGGgagcCGCCGuCGCCGCUgcacgacgauGGUCGaGGGg -3'
miRNA:   3'- -UCGCC----GCGGC-GCGGCGG----------CCGGCgCCC- -5'
29455 5' -70 NC_006151.1 + 38128 0.66 0.326892
Target:  5'- gGGcCGGCccgGCCGagcgGCgGCaGGCCGCGGa -3'
miRNA:   3'- -UC-GCCG---CGGCg---CGgCGgCCGGCGCCc -5'
29455 5' -70 NC_006151.1 + 139455 0.66 0.326892
Target:  5'- --aGGCGCCcCGCCGCCcGCCaccugcacaccGCGGc -3'
miRNA:   3'- ucgCCGCGGcGCGGCGGcCGG-----------CGCCc -5'
29455 5' -70 NC_006151.1 + 132037 0.66 0.326892
Target:  5'- uAGcCGGCGgCGCGCgGCaGcGCgGCGGa -3'
miRNA:   3'- -UC-GCCGCgGCGCGgCGgC-CGgCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.