miRNA display CGI


Results 21 - 40 of 667 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29455 5' -70 NC_006151.1 + 64512 0.79 0.038776
Target:  5'- gGGCGcGCGCCGCcaaagGCCGCCgcGGCCGCgucGGGg -3'
miRNA:   3'- -UCGC-CGCGGCG-----CGGCGG--CCGGCG---CCC- -5'
29455 5' -70 NC_006151.1 + 97996 0.79 0.038776
Target:  5'- gGGCGGCgugGCCGCGUaggcggCGCCGGCCagguccGCGGGg -3'
miRNA:   3'- -UCGCCG---CGGCGCG------GCGGCCGG------CGCCC- -5'
29455 5' -70 NC_006151.1 + 72062 0.79 0.03975
Target:  5'- cGGCGGCGCgcgccaccaccCGCGCCGUCaGCuCGCGGGc -3'
miRNA:   3'- -UCGCCGCG-----------GCGCGGCGGcCG-GCGCCC- -5'
29455 5' -70 NC_006151.1 + 95334 0.79 0.040748
Target:  5'- --aGGCGCCGC-CCGCCaGGCaCGCGGGc -3'
miRNA:   3'- ucgCCGCGGCGcGGCGG-CCG-GCGCCC- -5'
29455 5' -70 NC_006151.1 + 69578 0.79 0.040748
Target:  5'- --gGGUGCCGCGCCGCgacgagcuCGGCCGCGcGGc -3'
miRNA:   3'- ucgCCGCGGCGCGGCG--------GCCGGCGC-CC- -5'
29455 5' -70 NC_006151.1 + 1813 0.79 0.040748
Target:  5'- aGGCaGGCGCCggggaggcaaGCGCCGCCgGGCCGaGGGg -3'
miRNA:   3'- -UCG-CCGCGG----------CGCGGCGG-CCGGCgCCC- -5'
29455 5' -70 NC_006151.1 + 130898 0.79 0.040748
Target:  5'- aGGCGGCgGCCGuCGCCgucgucggugGCCGGgcCCGCGGGg -3'
miRNA:   3'- -UCGCCG-CGGC-GCGG----------CGGCC--GGCGCCC- -5'
29455 5' -70 NC_006151.1 + 90089 0.79 0.040748
Target:  5'- gGGCcccCGCCGCGCCGCaGGCCGCGGc -3'
miRNA:   3'- -UCGcc-GCGGCGCGGCGgCCGGCGCCc -5'
29455 5' -70 NC_006151.1 + 122666 0.78 0.041564
Target:  5'- cGCGaGCGCCGCGCCGaggugcgcgcggCGGCCGUGGa -3'
miRNA:   3'- uCGC-CGCGGCGCGGCg-----------GCCGGCGCCc -5'
29455 5' -70 NC_006151.1 + 103793 0.78 0.04177
Target:  5'- uGGCGGCGCUGCagGCCGCgcugucggCGGCCGUGGcGg -3'
miRNA:   3'- -UCGCCGCGGCG--CGGCG--------GCCGGCGCC-C- -5'
29455 5' -70 NC_006151.1 + 114114 0.78 0.04177
Target:  5'- cGGCGGCuGCUGCcccacgugcgccGCCGCCGaGCCGCGGc -3'
miRNA:   3'- -UCGCCG-CGGCG------------CGGCGGC-CGGCGCCc -5'
29455 5' -70 NC_006151.1 + 55474 0.78 0.042818
Target:  5'- gGGCGcGCGCCcgGCGCCGCgGacggccagccGCCGCGGGa -3'
miRNA:   3'- -UCGC-CGCGG--CGCGGCGgC----------CGGCGCCC- -5'
29455 5' -70 NC_006151.1 + 69284 0.78 0.043783
Target:  5'- uGGCGGCGCgccaccagggacaCGgGCCGCCGGCgccacacgugCGCGGGc -3'
miRNA:   3'- -UCGCCGCG-------------GCgCGGCGGCCG----------GCGCCC- -5'
29455 5' -70 NC_006151.1 + 5622 0.78 0.04488
Target:  5'- aGGgGGCGCCGcCGCCGCCgggcgccgagaccGGCCcggcgGCGGGg -3'
miRNA:   3'- -UCgCCGCGGC-GCGGCGG-------------CCGG-----CGCCC- -5'
29455 5' -70 NC_006151.1 + 88395 0.78 0.044991
Target:  5'- cGCGGCGuCCGCgGCCGCgaGGCC-CGGGa -3'
miRNA:   3'- uCGCCGC-GGCG-CGGCGg-CCGGcGCCC- -5'
29455 5' -70 NC_006151.1 + 36905 0.78 0.045438
Target:  5'- cGcCGGCGCCGCGCCggagaggcgcccuccGCCgcGGCCGCGGc -3'
miRNA:   3'- uC-GCCGCGGCGCGG---------------CGG--CCGGCGCCc -5'
29455 5' -70 NC_006151.1 + 81889 0.78 0.047271
Target:  5'- cGcCGGCGCCGagGCgCGCCGGUCGCGGc -3'
miRNA:   3'- uC-GCCGCGGCg-CG-GCGGCCGGCGCCc -5'
29455 5' -70 NC_006151.1 + 112973 0.78 0.047271
Target:  5'- uGGCGgacGCGCgCGCGCCGCCGaGCCuGgGGGg -3'
miRNA:   3'- -UCGC---CGCG-GCGCGGCGGC-CGG-CgCCC- -5'
29455 5' -70 NC_006151.1 + 130837 0.78 0.047271
Target:  5'- cGCGGCGCggaguCGuCGCCGUCGGCggCGCGGGc -3'
miRNA:   3'- uCGCCGCG-----GC-GCGGCGGCCG--GCGCCC- -5'
29455 5' -70 NC_006151.1 + 113085 0.78 0.048453
Target:  5'- cGCGGcCGUCGcCGCCGCCaccgggggcggGGCCGCGGa -3'
miRNA:   3'- uCGCC-GCGGC-GCGGCGG-----------CCGGCGCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.