miRNA display CGI


Results 21 - 40 of 667 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29455 5' -70 NC_006151.1 + 3910 0.66 0.326218
Target:  5'- aGGCcgGGCuGCuCGgGCCagagcgggggcagGCCGGgCGCGGGc -3'
miRNA:   3'- -UCG--CCG-CG-GCgCGG-------------CGGCCgGCGCCC- -5'
29455 5' -70 NC_006151.1 + 3972 0.75 0.077199
Target:  5'- cGCGGCgGCCucgGCGa-GCCGGCCGCGGc -3'
miRNA:   3'- uCGCCG-CGG---CGCggCGGCCGGCGCCc -5'
29455 5' -70 NC_006151.1 + 4082 0.66 0.333688
Target:  5'- cAGCGGCGCCaCGgUGCgGGCgaCGaGGGc -3'
miRNA:   3'- -UCGCCGCGGcGCgGCGgCCG--GCgCCC- -5'
29455 5' -70 NC_006151.1 + 4121 0.74 0.089064
Target:  5'- cGCGGCcuGCCGcCGCUcggccggGCCGGCCcCGGGg -3'
miRNA:   3'- uCGCCG--CGGC-GCGG-------CGGCCGGcGCCC- -5'
29455 5' -70 NC_006151.1 + 4216 0.68 0.237221
Target:  5'- gGGCGGcCGggGCGCgGgCGGgCGCGGGc -3'
miRNA:   3'- -UCGCC-GCggCGCGgCgGCCgGCGCCC- -5'
29455 5' -70 NC_006151.1 + 4282 0.71 0.140392
Target:  5'- cGCGGCagGCCaggacgcagGCGuCCGCCaGCuCGCGGGg -3'
miRNA:   3'- uCGCCG--CGG---------CGC-GGCGGcCG-GCGCCC- -5'
29455 5' -70 NC_006151.1 + 4337 0.69 0.221966
Target:  5'- cGCGGCGgCGaagGCgGCgCGGaCGCGGGc -3'
miRNA:   3'- uCGCCGCgGCg--CGgCG-GCCgGCGCCC- -5'
29455 5' -70 NC_006151.1 + 4396 0.66 0.320199
Target:  5'- cGCGGgGguCCGCGgCG-CGGCC-CGGGu -3'
miRNA:   3'- uCGCCgC--GGCGCgGCgGCCGGcGCCC- -5'
29455 5' -70 NC_006151.1 + 4571 0.69 0.198401
Target:  5'- cAGCGGCGgggucaCGCuGCCggugaugaaggaGCCguGGCCGUGGGg -3'
miRNA:   3'- -UCGCCGCg-----GCG-CGG------------CGG--CCGGCGCCC- -5'
29455 5' -70 NC_006151.1 + 4796 0.7 0.173028
Target:  5'- cGCGGCGCgGUa--GCgGGCCGCGGc -3'
miRNA:   3'- uCGCCGCGgCGcggCGgCCGGCGCCc -5'
29455 5' -70 NC_006151.1 + 4863 0.76 0.060321
Target:  5'- -cCGGCGCCGCcguagcggacgcgGCCGUCGGCCGgaGGGu -3'
miRNA:   3'- ucGCCGCGGCG-------------CGGCGGCCGGCg-CCC- -5'
29455 5' -70 NC_006151.1 + 4925 0.68 0.232041
Target:  5'- gAGCGGgGUgagcaGCGgcCCGUCGGUCGgCGGGg -3'
miRNA:   3'- -UCGCCgCGg----CGC--GGCGGCCGGC-GCCC- -5'
29455 5' -70 NC_006151.1 + 4994 0.69 0.207554
Target:  5'- gAGCGGCGCUuccuGCGCggggGCCGGgCGggcucCGGGg -3'
miRNA:   3'- -UCGCCGCGG----CGCGg---CGGCCgGC-----GCCC- -5'
29455 5' -70 NC_006151.1 + 5064 0.71 0.150591
Target:  5'- aGGCGGaggagGCCGaggGCCGCgGgGCCGCGGcGg -3'
miRNA:   3'- -UCGCCg----CGGCg--CGGCGgC-CGGCGCC-C- -5'
29455 5' -70 NC_006151.1 + 5113 0.67 0.28828
Target:  5'- cGGUGGCgGCC-CGgCGCgGGCgaGUGGGg -3'
miRNA:   3'- -UCGCCG-CGGcGCgGCGgCCGg-CGCCC- -5'
29455 5' -70 NC_006151.1 + 5232 0.76 0.060469
Target:  5'- aGGcCGaGCGCCGCGCgG-CGGCgGCGGGg -3'
miRNA:   3'- -UC-GC-CGCGGCGCGgCgGCCGgCGCCC- -5'
29455 5' -70 NC_006151.1 + 5360 0.74 0.09146
Target:  5'- -cCGGCGCgGCGCCGgCGGggcugucuCUGCGGGg -3'
miRNA:   3'- ucGCCGCGgCGCGGCgGCC--------GGCGCCC- -5'
29455 5' -70 NC_006151.1 + 5527 0.69 0.212266
Target:  5'- aAGCGGCcgaggaucgaGCCGCcUCG-CGGCgGCGGGc -3'
miRNA:   3'- -UCGCCG----------CGGCGcGGCgGCCGgCGCCC- -5'
29455 5' -70 NC_006151.1 + 5622 0.78 0.04488
Target:  5'- aGGgGGCGCCGcCGCCGCCgggcgccgagaccGGCCcggcgGCGGGg -3'
miRNA:   3'- -UCgCCGCGGC-GCGGCGG-------------CCGG-----CGCCC- -5'
29455 5' -70 NC_006151.1 + 5679 0.7 0.189601
Target:  5'- aAGCGGgccccCGCCGUGCCGgCG-CUGCGGc -3'
miRNA:   3'- -UCGCC-----GCGGCGCGGCgGCcGGCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.