miRNA display CGI


Results 1 - 20 of 667 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29455 5' -70 NC_006151.1 + 785 0.75 0.08303
Target:  5'- cGCGGuCGCCGuCGucaucgucCCGCCGGCCaaucgguggcaGCGGGg -3'
miRNA:   3'- uCGCC-GCGGC-GC--------GGCGGCCGG-----------CGCCC- -5'
29455 5' -70 NC_006151.1 + 1698 0.66 0.340587
Target:  5'- cGCGGcCGCCGcCGCCGCUuccaccaccGCCGCc-- -3'
miRNA:   3'- uCGCC-GCGGC-GCGGCGGc--------CGGCGccc -5'
29455 5' -70 NC_006151.1 + 1737 0.7 0.173028
Target:  5'- cGCcGcCGCCGCaGCCaccuCCGGCCGgGGGa -3'
miRNA:   3'- uCGcC-GCGGCG-CGGc---GGCCGGCgCCC- -5'
29455 5' -70 NC_006151.1 + 1813 0.79 0.040748
Target:  5'- aGGCaGGCGCCggggaggcaaGCGCCGCCgGGCCGaGGGg -3'
miRNA:   3'- -UCG-CCGCGG----------CGCGGCGG-CCGGCgCCC- -5'
29455 5' -70 NC_006151.1 + 2115 0.76 0.063507
Target:  5'- cGCGGgGCCG-GCCGUCGccGCCGCGGa -3'
miRNA:   3'- uCGCCgCGGCgCGGCGGC--CGGCGCCc -5'
29455 5' -70 NC_006151.1 + 2186 0.67 0.300739
Target:  5'- -cCGGCGCC-CGaggcccCCGCgGGCCgGUGGGu -3'
miRNA:   3'- ucGCCGCGGcGC------GGCGgCCGG-CGCCC- -5'
29455 5' -70 NC_006151.1 + 2232 0.69 0.193957
Target:  5'- cGGCGGCGgCGCGgaCGCUGGUCucgaaGGGg -3'
miRNA:   3'- -UCGCCGCgGCGCg-GCGGCCGGcg---CCC- -5'
29455 5' -70 NC_006151.1 + 2298 0.69 0.212266
Target:  5'- cGGCGGCGaCgGCGCCcgggGUCaGCaccaGCGGGg -3'
miRNA:   3'- -UCGCCGC-GgCGCGG----CGGcCGg---CGCCC- -5'
29455 5' -70 NC_006151.1 + 2353 0.7 0.174626
Target:  5'- cAGCaGCGCCGCGgCGCagaaggcgcgcaacuCGGCCGgcaggcccuCGGGg -3'
miRNA:   3'- -UCGcCGCGGCGCgGCG---------------GCCGGC---------GCCC- -5'
29455 5' -70 NC_006151.1 + 2458 0.72 0.127778
Target:  5'- cGgGGCGCCGagcccccaGCgGuuGGCCGCGcGGu -3'
miRNA:   3'- uCgCCGCGGCg-------CGgCggCCGGCGC-CC- -5'
29455 5' -70 NC_006151.1 + 2594 0.69 0.221966
Target:  5'- uGGCGGUaGgCGCGCgG-CGGCaGCGGGa -3'
miRNA:   3'- -UCGCCG-CgGCGCGgCgGCCGgCGCCC- -5'
29455 5' -70 NC_006151.1 + 2672 0.68 0.237221
Target:  5'- uGGCGGCagaGgCGCaGCgGCuCGGCCcCGGGg -3'
miRNA:   3'- -UCGCCG---CgGCG-CGgCG-GCCGGcGCCC- -5'
29455 5' -70 NC_006151.1 + 2914 0.81 0.02539
Target:  5'- gAGcCGGCGCCGCGCCgcGCCGaGCCGCGa- -3'
miRNA:   3'- -UC-GCCGCGGCGCGG--CGGC-CGGCGCcc -5'
29455 5' -70 NC_006151.1 + 3096 0.77 0.052175
Target:  5'- gAGCaGCGCCGagagGCCGCCGcGgCGCGGGu -3'
miRNA:   3'- -UCGcCGCGGCg---CGGCGGC-CgGCGCCC- -5'
29455 5' -70 NC_006151.1 + 3242 0.71 0.146775
Target:  5'- aGGCGGCGCgGCggcggagcggggcGCCG-CGGCgCGCGGc -3'
miRNA:   3'- -UCGCCGCGgCG-------------CGGCgGCCG-GCGCCc -5'
29455 5' -70 NC_006151.1 + 3383 0.75 0.081041
Target:  5'- aGGCGGCGa-GgGCCGCCucggagGGCCGCGGc -3'
miRNA:   3'- -UCGCCGCggCgCGGCGG------CCGGCGCCc -5'
29455 5' -70 NC_006151.1 + 3437 0.77 0.057571
Target:  5'- cGCGGCGgaaGcCGCCGUCGGgCGCGGGg -3'
miRNA:   3'- uCGCCGCgg-C-GCGGCGGCCgGCGCCC- -5'
29455 5' -70 NC_006151.1 + 3574 0.71 0.15776
Target:  5'- gAGCGGCGCuUGCGCCGgggcccCCGGUccucuucgucguCGCGGu -3'
miRNA:   3'- -UCGCCGCG-GCGCGGC------GGCCG------------GCGCCc -5'
29455 5' -70 NC_006151.1 + 3701 0.77 0.056035
Target:  5'- cGCGGCGCUucuucuuGCGCCGCuCGGgCGCuGGGu -3'
miRNA:   3'- uCGCCGCGG-------CGCGGCG-GCCgGCG-CCC- -5'
29455 5' -70 NC_006151.1 + 3869 0.77 0.059003
Target:  5'- aGGgGGCGcCCGcCGCCGCCGGCgccggCGCuGGGa -3'
miRNA:   3'- -UCgCCGC-GGC-GCGGCGGCCG-----GCG-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.