miRNA display CGI


Results 1 - 20 of 667 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29455 5' -70 NC_006151.1 + 141857 0.67 0.300106
Target:  5'- gGGCucGCGCCGCGCCcucugguGCCGGaggGcCGGGc -3'
miRNA:   3'- -UCGc-CGCGGCGCGG-------CGGCCgg-C-GCCC- -5'
29455 5' -70 NC_006151.1 + 141756 0.76 0.069861
Target:  5'- gGGCGcGCGCCccggugGCGUCGCCGGUucugucccggggaCGCGGGu -3'
miRNA:   3'- -UCGC-CGCGG------CGCGGCGGCCG-------------GCGCCC- -5'
29455 5' -70 NC_006151.1 + 141629 0.71 0.147118
Target:  5'- gGGCGG-GUCGCuGCCGCggCGGCgCGgCGGGg -3'
miRNA:   3'- -UCGCCgCGGCG-CGGCG--GCCG-GC-GCCC- -5'
29455 5' -70 NC_006151.1 + 140290 0.68 0.258916
Target:  5'- gAGCucguGCGCCgGCGCCGCC---UGCGGGa -3'
miRNA:   3'- -UCGc---CGCGG-CGCGGCGGccgGCGCCC- -5'
29455 5' -70 NC_006151.1 + 140170 0.71 0.155577
Target:  5'- aAGgGGCucacGCUGCGCaCGCUGGaccccaucguggccaCCGCGGGg -3'
miRNA:   3'- -UCgCCG----CGGCGCG-GCGGCC---------------GGCGCCC- -5'
29455 5' -70 NC_006151.1 + 139908 0.7 0.184909
Target:  5'- cGaCGGCuuCCGCGCCGCgGgcucgucGCCGUGGGc -3'
miRNA:   3'- uC-GCCGc-GGCGCGGCGgC-------CGGCGCCC- -5'
29455 5' -70 NC_006151.1 + 139801 0.68 0.253345
Target:  5'- gAGa-GCGCgCGCGCCGCCGucuccgcgacGCacgCGCGGGu -3'
miRNA:   3'- -UCgcCGCG-GCGCGGCGGC----------CG---GCGCCC- -5'
29455 5' -70 NC_006151.1 + 139658 0.73 0.110812
Target:  5'- cGCGGCgGgCGCGCCGCCcgacaGGCCcuGCGGc -3'
miRNA:   3'- uCGCCG-CgGCGCGGCGG-----CCGG--CGCCc -5'
29455 5' -70 NC_006151.1 + 139623 0.7 0.189601
Target:  5'- cGCGGCuggggGCCaucCGgCGCCGGC-GCGGGg -3'
miRNA:   3'- uCGCCG-----CGGc--GCgGCGGCCGgCGCCC- -5'
29455 5' -70 NC_006151.1 + 139455 0.66 0.326892
Target:  5'- --aGGCGCCcCGCCGCCcGCCaccugcacaccGCGGc -3'
miRNA:   3'- ucgCCGCGGcGCGGCGGcCGG-----------CGCCc -5'
29455 5' -70 NC_006151.1 + 139278 0.67 0.276231
Target:  5'- cGaCGGCGgaCGCGCCGCCcucGGCgucUGCGGc -3'
miRNA:   3'- uC-GCCGCg-GCGCGGCGG---CCG---GCGCCc -5'
29455 5' -70 NC_006151.1 + 138981 0.73 0.113486
Target:  5'- cGCGacGCGCCGCGCCGCgCucaGCCGCGa- -3'
miRNA:   3'- uCGC--CGCGGCGCGGCG-Gc--CGGCGCcc -5'
29455 5' -70 NC_006151.1 + 138741 0.71 0.143719
Target:  5'- cGC-GCGCCGCGaCUGCCGcGCCuaccuGUGGGa -3'
miRNA:   3'- uCGcCGCGGCGC-GGCGGC-CGG-----CGCCC- -5'
29455 5' -70 NC_006151.1 + 138706 0.72 0.133948
Target:  5'- gAGCccGGCGCUGCG-CGCCGcGC-GCGGGu -3'
miRNA:   3'- -UCG--CCGCGGCGCgGCGGC-CGgCGCCC- -5'
29455 5' -70 NC_006151.1 + 138604 0.72 0.136172
Target:  5'- cGCGGCGCUGCcgcucggcgaggacGCCGCCGGgggCGCGccGGa -3'
miRNA:   3'- uCGCCGCGGCG--------------CGGCGGCCg--GCGC--CC- -5'
29455 5' -70 NC_006151.1 + 138115 0.77 0.059003
Target:  5'- uGGCGGacauGCUGCGCgGCCuGGCCGUGGa -3'
miRNA:   3'- -UCGCCg---CGGCGCGgCGG-CCGGCGCCc -5'
29455 5' -70 NC_006151.1 + 137770 0.7 0.185332
Target:  5'- uGGCGcGCgugcuccagcagGCCGUGCUGCUGGa-GCGGGa -3'
miRNA:   3'- -UCGC-CG------------CGGCGCGGCGGCCggCGCCC- -5'
29455 5' -70 NC_006151.1 + 137738 0.73 0.103143
Target:  5'- cGCGGUgGCCgGCGCCGacaCGGuCCGCGGc -3'
miRNA:   3'- uCGCCG-CGG-CGCGGCg--GCC-GGCGCCc -5'
29455 5' -70 NC_006151.1 + 137513 0.68 0.226956
Target:  5'- -uUGGCGCCGCGCCGggcgacgaggacUgGGCggacugggaCGCGGGc -3'
miRNA:   3'- ucGCCGCGGCGCGGC------------GgCCG---------GCGCCC- -5'
29455 5' -70 NC_006151.1 + 137412 0.83 0.020784
Target:  5'- gGGgGGCGCCcuCGCCGCC-GCCGCGGGg -3'
miRNA:   3'- -UCgCCGCGGc-GCGGCGGcCGGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.