Results 1 - 20 of 667 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29455 | 5' | -70 | NC_006151.1 | + | 64613 | 1.09 | 0.000199 |
Target: 5'- cAGCGGCGCCGCGCCGCCGGCCGCGGGg -3' miRNA: 3'- -UCGCCGCGGCGCGGCGGCCGGCGCCC- -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 75223 | 0.66 | 0.340587 |
Target: 5'- gGGCGcGCGUCggccacguagGCGCCGaaGGCgcacugcaccucCGCGGGc -3' miRNA: 3'- -UCGC-CGCGG----------CGCGGCggCCG------------GCGCCC- -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 70780 | 0.66 | 0.340587 |
Target: 5'- cGCGcGCGCCuccggcaccgGCGUgGCCG-UCGUGGGc -3' miRNA: 3'- uCGC-CGCGG----------CGCGgCGGCcGGCGCCC- -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 1698 | 0.66 | 0.340587 |
Target: 5'- cGCGGcCGCCGcCGCCGCUuccaccaccGCCGCc-- -3' miRNA: 3'- uCGCC-GCGGC-GCGGCGGc--------CGGCGccc -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 52858 | 0.66 | 0.340587 |
Target: 5'- uGCGGCuGCUGCGUgGCC--UCGCGGu -3' miRNA: 3'- uCGCCG-CGGCGCGgCGGccGGCGCCc -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 49256 | 0.66 | 0.340587 |
Target: 5'- cGCGGCucGUgCGCGCCGUCGuCCaGCGGc -3' miRNA: 3'- uCGCCG--CG-GCGCGGCGGCcGG-CGCCc -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 22971 | 0.66 | 0.339893 |
Target: 5'- cGGUGGUGaCCGUggucaugGUCGUgaucuCGGCCGCGcGGg -3' miRNA: 3'- -UCGCCGC-GGCG-------CGGCG-----GCCGGCGC-CC- -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 91768 | 0.66 | 0.339893 |
Target: 5'- gGGCGGUG-UGCGCCagaccaaucaccGcCCGGCuuauaugCGCGGGa -3' miRNA: 3'- -UCGCCGCgGCGCGG------------C-GGCCG-------GCGCCC- -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 116994 | 0.66 | 0.338507 |
Target: 5'- cGCuGGUGCCGCaGCaccacgcgcuccccCGCgGGCC-CGGGc -3' miRNA: 3'- uCG-CCGCGGCG-CG--------------GCGgCCGGcGCCC- -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 94664 | 0.66 | 0.340587 |
Target: 5'- cAGCgGGUGCCcgGCGggcagcuccCCGaaGGCCGCGGc -3' miRNA: 3'- -UCG-CCGCGG--CGC---------GGCggCCGGCGCCc -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 113203 | 0.66 | 0.340587 |
Target: 5'- cAGaCGGaCGCCgccgaggaGCGCCGgcaCCGcGCCGUGGa -3' miRNA: 3'- -UC-GCC-GCGG--------CGCGGC---GGC-CGGCGCCc -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 117419 | 0.66 | 0.340587 |
Target: 5'- cAGCaGCGugaccaCCGUGCCGuuGGggaagCGCGGGu -3' miRNA: 3'- -UCGcCGC------GGCGCGGCggCCg----GCGCCC- -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 95212 | 0.66 | 0.343376 |
Target: 5'- cAGCGaGCgGCUGCGCCGCacgcccucgaccgaGGCgccCGuCGGGu -3' miRNA: 3'- -UCGC-CG-CGGCGCGGCGg-------------CCG---GC-GCCC- -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 9044 | 0.66 | 0.343376 |
Target: 5'- cGgGGCGCCccgcgugcuccggggGCGCCgGCCGGCCa---- -3' miRNA: 3'- uCgCCGCGG---------------CGCGG-CGGCCGGcgccc -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 32765 | 0.66 | 0.340587 |
Target: 5'- cGCccCGCUcucccaCGCCG-CGGCCGCGGGg -3' miRNA: 3'- uCGccGCGGc-----GCGGCgGCCGGCGCCC- -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 103302 | 0.66 | 0.340587 |
Target: 5'- cGCGGCucgcGCgGCGCgaCGCCGaGCUGCGc- -3' miRNA: 3'- uCGCCG----CGgCGCG--GCGGC-CGGCGCcc -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 82862 | 0.66 | 0.340587 |
Target: 5'- cGCGGUcuccaucugGCCGCGgCGCgGGUgGgaGGGg -3' miRNA: 3'- uCGCCG---------CGGCGCgGCGgCCGgCg-CCC- -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 56106 | 0.66 | 0.340587 |
Target: 5'- -cCGcCGCCGCuGCCucGCCGGggaggccuuCCGCGGGu -3' miRNA: 3'- ucGCcGCGGCG-CGG--CGGCC---------GGCGCCC- -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 20856 | 0.66 | 0.340587 |
Target: 5'- cGGCGGCGUacuCGCGCgUGUagcaGGCgCGCuuGGGg -3' miRNA: 3'- -UCGCCGCG---GCGCG-GCGg---CCG-GCG--CCC- -5' |
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29455 | 5' | -70 | NC_006151.1 | + | 117629 | 0.66 | 0.340587 |
Target: 5'- cGCGaGCGUgcccaCGUGCaCGCCGcGCUGCuccGGGg -3' miRNA: 3'- uCGC-CGCG-----GCGCG-GCGGC-CGGCG---CCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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