miRNA display CGI


Results 1 - 20 of 667 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29455 5' -70 NC_006151.1 + 64613 1.09 0.000199
Target:  5'- cAGCGGCGCCGCGCCGCCGGCCGCGGGg -3'
miRNA:   3'- -UCGCCGCGGCGCGGCGGCCGGCGCCC- -5'
29455 5' -70 NC_006151.1 + 101756 0.87 0.00978
Target:  5'- cGGCGGcCGCCGCGCCGCCGa-CGCGGGg -3'
miRNA:   3'- -UCGCC-GCGGCGCGGCGGCcgGCGCCC- -5'
29455 5' -70 NC_006151.1 + 119050 0.86 0.011375
Target:  5'- cGGCGGCGCCGCgGCCGCCu-CCGCGGGc -3'
miRNA:   3'- -UCGCCGCGGCG-CGGCGGccGGCGCCC- -5'
29455 5' -70 NC_006151.1 + 5728 0.85 0.013876
Target:  5'- uGGUGGCgccgggguccgagGCCGCGCCGCCGGCC-CGGGc -3'
miRNA:   3'- -UCGCCG-------------CGGCGCGGCGGCCGGcGCCC- -5'
29455 5' -70 NC_006151.1 + 89718 0.84 0.015
Target:  5'- cGGCGGCGCCG-GCCG-CGGCCGCGGu -3'
miRNA:   3'- -UCGCCGCGGCgCGGCgGCCGGCGCCc -5'
29455 5' -70 NC_006151.1 + 69432 0.84 0.017439
Target:  5'- aGGCGGCGCCGcCGCCGUucgcguccucgCGcGCCGCGGGc -3'
miRNA:   3'- -UCGCCGCGGC-GCGGCG-----------GC-CGGCGCCC- -5'
29455 5' -70 NC_006151.1 + 29066 0.83 0.017882
Target:  5'- uGGCGGCGCCGCGggccCCGagaCGGCCGCGGc -3'
miRNA:   3'- -UCGCCGCGGCGC----GGCg--GCCGGCGCCc -5'
29455 5' -70 NC_006151.1 + 64465 0.83 0.02027
Target:  5'- uGGCGGCG-CGCGCCGCC-GCgGCGGGg -3'
miRNA:   3'- -UCGCCGCgGCGCGGCGGcCGgCGCCC- -5'
29455 5' -70 NC_006151.1 + 137412 0.83 0.020784
Target:  5'- gGGgGGCGCCcuCGCCGCC-GCCGCGGGg -3'
miRNA:   3'- -UCgCCGCGGc-GCGGCGGcCGGCGCCC- -5'
29455 5' -70 NC_006151.1 + 96203 0.82 0.021852
Target:  5'- uGgGGCGCCGCGUCGCCguggcggcGGCCGCGGc -3'
miRNA:   3'- uCgCCGCGGCGCGGCGG--------CCGGCGCCc -5'
29455 5' -70 NC_006151.1 + 127992 0.82 0.022405
Target:  5'- cGGCGGCuCCGCGUCG-CGGUCGCGGGg -3'
miRNA:   3'- -UCGCCGcGGCGCGGCgGCCGGCGCCC- -5'
29455 5' -70 NC_006151.1 + 2914 0.81 0.02539
Target:  5'- gAGcCGGCGCCGCGCCgcGCCGaGCCGCGa- -3'
miRNA:   3'- -UC-GCCGCGGCGCGG--CGGC-CGGCGCcc -5'
29455 5' -70 NC_006151.1 + 84625 0.81 0.026032
Target:  5'- cGCGGcCGCCGCGgCGCUggacaacgccauGGCCGCGGGc -3'
miRNA:   3'- uCGCC-GCGGCGCgGCGG------------CCGGCGCCC- -5'
29455 5' -70 NC_006151.1 + 57518 0.81 0.026032
Target:  5'- cGGCGGCGgCG-GCCGCCuccggcgcGGCCGCGGGc -3'
miRNA:   3'- -UCGCCGCgGCgCGGCGG--------CCGGCGCCC- -5'
29455 5' -70 NC_006151.1 + 101864 0.8 0.030237
Target:  5'- cGGCGGCGCacCGCucccGCCGCC-GCCGCGGGu -3'
miRNA:   3'- -UCGCCGCG--GCG----CGGCGGcCGGCGCCC- -5'
29455 5' -70 NC_006151.1 + 57982 0.8 0.03054
Target:  5'- gGGCGGCGagCGCGCCGCggaccgccuccggcgCGGCCGCGGc -3'
miRNA:   3'- -UCGCCGCg-GCGCGGCG---------------GCCGGCGCCc -5'
29455 5' -70 NC_006151.1 + 101295 0.8 0.032502
Target:  5'- gGGCGGCGCCGCGCUGCaCuGCgucuucuCGCGGGu -3'
miRNA:   3'- -UCGCCGCGGCGCGGCG-GcCG-------GCGCCC- -5'
29455 5' -70 NC_006151.1 + 123023 0.8 0.033404
Target:  5'- cGGCGGaCGCCGUGgcgugggcggacCUGCCGGCCGCGGc -3'
miRNA:   3'- -UCGCC-GCGGCGC------------GGCGGCCGGCGCCc -5'
29455 5' -70 NC_006151.1 + 21460 0.8 0.033404
Target:  5'- cGGCGGCGuggucCCGCGUCGCCGGCU-CGGGc -3'
miRNA:   3'- -UCGCCGC-----GGCGCGGCGGCCGGcGCCC- -5'
29455 5' -70 NC_006151.1 + 87184 0.8 0.035108
Target:  5'- cGCGGCGCCGCcgcagcugcuGCCGCCcggGGCCGUcguGGGa -3'
miRNA:   3'- uCGCCGCGGCG----------CGGCGG---CCGGCG---CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.