miRNA display CGI


Results 41 - 60 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 10663 0.67 0.456023
Target:  5'- aGGCgGCGgGGGaGCgCGGaGCgCGCCGcCCc -3'
miRNA:   3'- -CCG-CGUgCCC-CG-GCC-CGaGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 10908 0.79 0.075693
Target:  5'- cGGCGCGgacCGGGGUCGGGCccacggCGCCGAg- -3'
miRNA:   3'- -CCGCGU---GCCCCGGCCCGa-----GCGGCUgg -5'
29458 3' -65.5 NC_006151.1 + 10995 0.72 0.228211
Target:  5'- aGCGgGCcgGGGGCCccGGCUCGCCcGCCc -3'
miRNA:   3'- cCGCgUG--CCCCGGc-CCGAGCGGcUGG- -5'
29458 3' -65.5 NC_006151.1 + 11236 0.67 0.473347
Target:  5'- gGGC-CGCGaGGGCCGcGGC--GgCGACCc -3'
miRNA:   3'- -CCGcGUGC-CCCGGC-CCGagCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 11684 0.68 0.390382
Target:  5'- uGCGCccgACGGGGCCGcGGgaCgGCgCGugCg -3'
miRNA:   3'- cCGCG---UGCCCCGGC-CCgaG-CG-GCugG- -5'
29458 3' -65.5 NC_006151.1 + 11790 0.68 0.40541
Target:  5'- gGGCGCgugggcgagagggGCGGGGUgGGGUggggggCGgCGGCg -3'
miRNA:   3'- -CCGCG-------------UGCCCCGgCCCGa-----GCgGCUGg -5'
29458 3' -65.5 NC_006151.1 + 11903 0.67 0.473347
Target:  5'- aGGCGCGuCGGGGUuuuCGcGCccucgCGCCGccGCCg -3'
miRNA:   3'- -CCGCGU-GCCCCG---GCcCGa----GCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 13942 0.7 0.31751
Target:  5'- cGgGgGCGGGcGCCccgGGGacgCGCCGGCCa -3'
miRNA:   3'- cCgCgUGCCC-CGG---CCCga-GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 14064 0.67 0.439046
Target:  5'- gGGUGCGUGGcGGCCcGGCcgacggcacUCGCCGcCCc -3'
miRNA:   3'- -CCGCGUGCC-CCGGcCCG---------AGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 14570 0.68 0.398246
Target:  5'- gGGaCGCgaGCGGGaCC-GGCUgGUCGACCa -3'
miRNA:   3'- -CC-GCG--UGCCCcGGcCCGAgCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 14637 0.66 0.518019
Target:  5'- -cCGuCGgGGcGGCCGGGCUCGgguCCGGuuCCg -3'
miRNA:   3'- ccGC-GUgCC-CCGGCCCGAGC---GGCU--GG- -5'
29458 3' -65.5 NC_006151.1 + 15049 0.78 0.087842
Target:  5'- cGGCGCGCGGGGCCccGGCgccuucUGCgCGGCCc -3'
miRNA:   3'- -CCGCGUGCCCCGGc-CCGa-----GCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 17016 0.7 0.297741
Target:  5'- uGGCGCG-GGuGGCCGGGaUC-CCGGCg -3'
miRNA:   3'- -CCGCGUgCC-CCGGCCCgAGcGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 17093 0.69 0.338251
Target:  5'- aGGCGCGCgcccgucgGGGcGCCGGGggCuCCGGCg -3'
miRNA:   3'- -CCGCGUG--------CCC-CGGCCCgaGcGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 17278 0.67 0.422437
Target:  5'- gGGCGgGCugauacggaGGGGCucccCGGGCUUcgaGCCGuCCg -3'
miRNA:   3'- -CCGCgUG---------CCCCG----GCCCGAG---CGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 17822 0.73 0.185508
Target:  5'- gGGCGCgGCGGGG-CGGGCg-GCC-ACCa -3'
miRNA:   3'- -CCGCG-UGCCCCgGCCCGagCGGcUGG- -5'
29458 3' -65.5 NC_006151.1 + 18051 0.69 0.367407
Target:  5'- gGGCGCagcggggaGCGGGGUCccuuggGGGCcagcaggacgUCGgCGGCCg -3'
miRNA:   3'- -CCGCG--------UGCCCCGG------CCCG----------AGCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 18693 0.74 0.153627
Target:  5'- gGGCGCGCGGGcggcGCCGGcGUcgugaCGCCGuCCa -3'
miRNA:   3'- -CCGCGUGCCC----CGGCC-CGa----GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 18766 0.7 0.278941
Target:  5'- gGGUGCcCGGGGcCCGGGCcgggGCCGucagcuCCu -3'
miRNA:   3'- -CCGCGuGCCCC-GGCCCGag--CGGCu-----GG- -5'
29458 3' -65.5 NC_006151.1 + 19072 0.66 0.482132
Target:  5'- gGGCGCGCGcGGGUgguagaugcaGGGCUCGUacACg -3'
miRNA:   3'- -CCGCGUGC-CCCGg---------CCCGAGCGgcUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.