miRNA display CGI


Results 21 - 40 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 4780 0.67 0.430695
Target:  5'- cGgGCACGGgcccGGCCGcGGCgcgguaGCgGGCCg -3'
miRNA:   3'- cCgCGUGCC----CCGGC-CCGag----CGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 5007 0.76 0.129896
Target:  5'- uGCGCG-GGGGCCGGGCggGCUccggGGCCg -3'
miRNA:   3'- cCGCGUgCCCCGGCCCGagCGG----CUGG- -5'
29458 3' -65.5 NC_006151.1 + 5080 0.83 0.037401
Target:  5'- gGGC-CGCGGGGCCGcGGCgggCGCCGGCg -3'
miRNA:   3'- -CCGcGUGCCCCGGC-CCGa--GCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 5259 0.66 0.482132
Target:  5'- gGGCcCGgGGGGCggaGGGCgaGCgGGCCg -3'
miRNA:   3'- -CCGcGUgCCCCGg--CCCGagCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 5366 0.75 0.133066
Target:  5'- cGGCGCcgGCGGGGCUgucucugcggGGGCgcccCGCCGuCCc -3'
miRNA:   3'- -CCGCG--UGCCCCGG----------CCCGa---GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 5546 0.69 0.352616
Target:  5'- cGCcuCGCGGcGG-CGGGCUCGUCGAgCa -3'
miRNA:   3'- cCGc-GUGCC-CCgGCCCGAGCGGCUgG- -5'
29458 3' -65.5 NC_006151.1 + 5616 0.68 0.414275
Target:  5'- cGGCGgAgGGGgcgccgccgccGCCGGGCgccgaGaCCGGCCc -3'
miRNA:   3'- -CCGCgUgCCC-----------CGGCCCGag---C-GGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 5731 0.79 0.072014
Target:  5'- uGGCGC-CGGGGuCCGaGGCcgcgcCGCCGGCCc -3'
miRNA:   3'- -CCGCGuGCCCC-GGC-CCGa----GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 5808 0.69 0.359958
Target:  5'- gGGCuGCcgaGGGGCCGGGagaGCCGgaggaggagGCCg -3'
miRNA:   3'- -CCG-CGug-CCCCGGCCCgagCGGC---------UGG- -5'
29458 3' -65.5 NC_006151.1 + 5868 0.73 0.198898
Target:  5'- aGCGCcCGGGGCCgccggGGGC-C-CCGGCCu -3'
miRNA:   3'- cCGCGuGCCCCGG-----CCCGaGcGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 5923 0.72 0.228211
Target:  5'- cGGCgGC-CGGGGCCcGGa--GCCGGCCc -3'
miRNA:   3'- -CCG-CGuGCCCCGGcCCgagCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 6014 0.72 0.213122
Target:  5'- cGGCgGC-CGGGGacCCGGGCUCGUCcuCCu -3'
miRNA:   3'- -CCG-CGuGCCCC--GGCCCGAGCGGcuGG- -5'
29458 3' -65.5 NC_006151.1 + 6235 0.71 0.272887
Target:  5'- cGGCGC-CGGGaGCCcuGGCUgcCGCCGucgggGCCg -3'
miRNA:   3'- -CCGCGuGCCC-CGGc-CCGA--GCGGC-----UGG- -5'
29458 3' -65.5 NC_006151.1 + 7018 0.71 0.244195
Target:  5'- cGGCcccCGCGGcGGCCaucucGGCUCGCCcgGGCCa -3'
miRNA:   3'- -CCGc--GUGCC-CCGGc----CCGAGCGG--CUGG- -5'
29458 3' -65.5 NC_006151.1 + 8239 0.7 0.278941
Target:  5'- cGGCGgGgaGGGCCGGGCcggcgCGCCGggacGCCc -3'
miRNA:   3'- -CCGCgUgcCCCGGCCCGa----GCGGC----UGG- -5'
29458 3' -65.5 NC_006151.1 + 8329 0.69 0.365161
Target:  5'- gGGCGCGCGGGccucgaucgcgcccGCCGGacGCggaggCGCgaGGCCc -3'
miRNA:   3'- -CCGCGUGCCC--------------CGGCC--CGa----GCGg-CUGG- -5'
29458 3' -65.5 NC_006151.1 + 8968 0.73 0.185508
Target:  5'- cGCGCGCGccccgggaaGGGUCGGGCgauggcCGCCG-CCa -3'
miRNA:   3'- cCGCGUGC---------CCCGGCCCGa-----GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 9040 0.71 0.254792
Target:  5'- -cCGC-CGGGGCgccccgcgugcucCGGGggCGCCGGCCg -3'
miRNA:   3'- ccGCGuGCCCCG-------------GCCCgaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 9387 0.7 0.285723
Target:  5'- gGGCccccCGCGcGGGUCGGGCcuucuuccccaucccCGCCGGCCc -3'
miRNA:   3'- -CCGc---GUGC-CCCGGCCCGa--------------GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 10561 0.72 0.233439
Target:  5'- cGGCGCccaaugGCGcGGCC-GGCUCGgCGGCCc -3'
miRNA:   3'- -CCGCG------UGCcCCGGcCCGAGCgGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.