miRNA display CGI


Results 21 - 40 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 20716 0.77 0.096237
Target:  5'- cGCGUccgGCGGGGCCGGGCgcgagacgaacagcaGCCGGCg -3'
miRNA:   3'- cCGCG---UGCCCCGGCCCGag-------------CGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 85170 0.77 0.096949
Target:  5'- cGGCGcCGCGGGcgccgccgccccGCUGGGCaUCGCgGACCu -3'
miRNA:   3'- -CCGC-GUGCCC------------CGGCCCG-AGCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 86314 0.77 0.096949
Target:  5'- cGCaGCugGGGGCCGuGCUCGCCcgcGCCg -3'
miRNA:   3'- cCG-CGugCCCCGGCcCGAGCGGc--UGG- -5'
29458 3' -65.5 NC_006151.1 + 96589 0.77 0.096949
Target:  5'- cGGCGCgagGCGccGGGCgCGGGCgCGCCGACg -3'
miRNA:   3'- -CCGCG---UGC--CCCG-GCCCGaGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 30703 0.77 0.096949
Target:  5'- gGGUGU-CGGGGCCGGGUUCGCUcuguACCc -3'
miRNA:   3'- -CCGCGuGCCCCGGCCCGAGCGGc---UGG- -5'
29458 3' -65.5 NC_006151.1 + 31672 0.77 0.101831
Target:  5'- gGGCGgAgGaaGGGCCGGGC-CGCCGAgCCg -3'
miRNA:   3'- -CCGCgUgC--CCCGGCCCGaGCGGCU-GG- -5'
29458 3' -65.5 NC_006151.1 + 48673 0.77 0.101831
Target:  5'- cGGgGCA-GGGGCCGGGgcCUCgaaGCCGGCCc -3'
miRNA:   3'- -CCgCGUgCCCCGGCCC--GAG---CGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 658 0.77 0.106944
Target:  5'- gGGCGCGgcCGGGG-CGGGCUCcGCgGAUCg -3'
miRNA:   3'- -CCGCGU--GCCCCgGCCCGAG-CGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 44678 0.77 0.10959
Target:  5'- uGCGCACGGcGGCC-GGCg-GCUGACCg -3'
miRNA:   3'- cCGCGUGCC-CCGGcCCGagCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 133504 0.77 0.10959
Target:  5'- cGGCGCGgGGGGCgCGGGaggaGCCGuaGCCa -3'
miRNA:   3'- -CCGCGUgCCCCG-GCCCgag-CGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 139646 0.77 0.10959
Target:  5'- cGGCGCG-GGGGUCGcGGCgggcgCGCCGcCCg -3'
miRNA:   3'- -CCGCGUgCCCCGGC-CCGa----GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 3894 0.76 0.112024
Target:  5'- cGGCGCugGGacgacgaGGCCGGGCU-GCUcgGGCCa -3'
miRNA:   3'- -CCGCGugCC-------CCGGCCCGAgCGG--CUGG- -5'
29458 3' -65.5 NC_006151.1 + 64231 0.76 0.112298
Target:  5'- cGGCGUACaGGGCCGcgacGGCggCGCgGGCCa -3'
miRNA:   3'- -CCGCGUGcCCCGGC----CCGa-GCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 52371 0.76 0.115067
Target:  5'- cGGCGCGCccccGGGGCCcgcggGGGCggcgggCGCCG-CCg -3'
miRNA:   3'- -CCGCGUG----CCCCGG-----CCCGa-----GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 106680 0.76 0.117901
Target:  5'- cGGCGCuCGGcGcGCCGGGCgcCGgCGACCu -3'
miRNA:   3'- -CCGCGuGCC-C-CGGCCCGa-GCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 104057 0.76 0.120799
Target:  5'- gGGCGCGCGcGGCCGacgcGGCgcugCGCCGcGCCg -3'
miRNA:   3'- -CCGCGUGCcCCGGC----CCGa---GCGGC-UGG- -5'
29458 3' -65.5 NC_006151.1 + 126136 0.76 0.129896
Target:  5'- gGGCGCucgccauCGGGcuGCUGGuGCUgGCCGGCCu -3'
miRNA:   3'- -CCGCGu------GCCC--CGGCC-CGAgCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 127529 0.76 0.129896
Target:  5'- uGGCGCgucaGCGGGGCCcaggGGGCgUCGUCGucgugGCCg -3'
miRNA:   3'- -CCGCG----UGCCCCGG----CCCG-AGCGGC-----UGG- -5'
29458 3' -65.5 NC_006151.1 + 5007 0.76 0.129896
Target:  5'- uGCGCG-GGGGCCGGGCggGCUccggGGCCg -3'
miRNA:   3'- cCGCGUgCCCCGGCCCGagCGG----CUGG- -5'
29458 3' -65.5 NC_006151.1 + 135092 0.75 0.133066
Target:  5'- gGGCG-GCGGGGCCGGGCg-GgCGGCg -3'
miRNA:   3'- -CCGCgUGCCCCGGCCCGagCgGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.