miRNA display CGI


Results 1 - 20 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 63182 1.12 0.000278
Target:  5'- gGGCGCACGGGGCCGGGCUCGCCGACCa -3'
miRNA:   3'- -CCGCGUGCCCCGGCCCGAGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 130269 0.84 0.030511
Target:  5'- cGGCGCGCGGccccgaGGCCgcGGGCgcgCGCCGGCCg -3'
miRNA:   3'- -CCGCGUGCC------CCGG--CCCGa--GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 111360 0.84 0.031298
Target:  5'- gGGCGCGCGGGGCgaGGGCcccUCGCCGucgucGCCg -3'
miRNA:   3'- -CCGCGUGCCCCGg-CCCG---AGCGGC-----UGG- -5'
29458 3' -65.5 NC_006151.1 + 5080 0.83 0.037401
Target:  5'- gGGC-CGCGGGGCCGcGGCgggCGCCGGCg -3'
miRNA:   3'- -CCGcGUGCCCCGGC-CCGa--GCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 106509 0.81 0.056055
Target:  5'- uGGCGCGCGccguGCCGGGCgCGCUGGCCa -3'
miRNA:   3'- -CCGCGUGCcc--CGGCCCGaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 78668 0.81 0.057482
Target:  5'- cGGgGCGCGGGuGCuggaCGGGCUcuaCGCCGGCCg -3'
miRNA:   3'- -CCgCGUGCCC-CG----GCCCGA---GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 19277 0.8 0.061979
Target:  5'- uGGCGCGCGGGGCCcaccgGGGCcagcggCGCgggCGGCCg -3'
miRNA:   3'- -CCGCGUGCCCCGG-----CCCGa-----GCG---GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 66505 0.8 0.065164
Target:  5'- aGCGCGCGGaucuucGCCGGGCUCGCgCGcGCCg -3'
miRNA:   3'- cCGCGUGCCc-----CGGCCCGAGCG-GC-UGG- -5'
29458 3' -65.5 NC_006151.1 + 120339 0.8 0.065164
Target:  5'- cGCGCGCGcccgcguGGCCGGGCUCGCgGGCg -3'
miRNA:   3'- cCGCGUGCc------CCGGCCCGAGCGgCUGg -5'
29458 3' -65.5 NC_006151.1 + 5731 0.79 0.072014
Target:  5'- uGGCGC-CGGGGuCCGaGGCcgcgcCGCCGGCCc -3'
miRNA:   3'- -CCGCGuGCCCC-GGC-CCGa----GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 63517 0.79 0.075693
Target:  5'- gGGCGCGCGGGGCgguCGGGgaagaCGCCGGCg -3'
miRNA:   3'- -CCGCGUGCCCCG---GCCCga---GCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 10908 0.79 0.075693
Target:  5'- cGGCGCGgacCGGGGUCGGGCccacggCGCCGAg- -3'
miRNA:   3'- -CCGCGU---GCCCCGGCCCGa-----GCGGCUgg -5'
29458 3' -65.5 NC_006151.1 + 55437 0.78 0.083599
Target:  5'- gGGCGCggACGGGaCCGGcGC-CGCCGGCCc -3'
miRNA:   3'- -CCGCG--UGCCCcGGCC-CGaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 141648 0.78 0.085484
Target:  5'- cGGCGCgGCGGGGCCccgcGGGCUCGuuGuggaggcaugucuGCCu -3'
miRNA:   3'- -CCGCG-UGCCCCGG----CCCGAGCggC-------------UGG- -5'
29458 3' -65.5 NC_006151.1 + 69189 0.78 0.085484
Target:  5'- cGCGCGCcaGGGGCUcgcuccgGGGCccgCGCCGGCCg -3'
miRNA:   3'- cCGCGUG--CCCCGG-------CCCGa--GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 121412 0.78 0.085696
Target:  5'- cGGCGCggGCGGGgacgucGCgGGGCUcgCGCCGGCCu -3'
miRNA:   3'- -CCGCG--UGCCC------CGgCCCGA--GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 68046 0.78 0.087842
Target:  5'- cGGCGCGgcGGGCaCGGGCUCGgCGACg -3'
miRNA:   3'- -CCGCGUgcCCCG-GCCCGAGCgGCUGg -5'
29458 3' -65.5 NC_006151.1 + 15049 0.78 0.087842
Target:  5'- cGGCGCGCGGGGCCccGGCgccuucUGCgCGGCCc -3'
miRNA:   3'- -CCGCGUGCCCCGGc-CCGa-----GCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 77041 0.78 0.09004
Target:  5'- aGGCaGCACGcGGGCCGGaGCgcgagCGCCagGGCCa -3'
miRNA:   3'- -CCG-CGUGC-CCCGGCC-CGa----GCGG--CUGG- -5'
29458 3' -65.5 NC_006151.1 + 2111 0.78 0.094592
Target:  5'- gGGC-CGCGGGGCCGGcCgUCGCCG-CCg -3'
miRNA:   3'- -CCGcGUGCCCCGGCCcG-AGCGGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.