miRNA display CGI


Results 1 - 20 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 658 0.77 0.106944
Target:  5'- gGGCGCGgcCGGGG-CGGGCUCcGCgGAUCg -3'
miRNA:   3'- -CCGCGU--GCCCCgGCCCGAG-CGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 1817 0.69 0.360698
Target:  5'- aGGCGC-CGGGgaggcaagcgccGCCGGGCcgaggggaccgaggcCGCCG-CCg -3'
miRNA:   3'- -CCGCGuGCCC------------CGGCCCGa--------------GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 2111 0.78 0.094592
Target:  5'- gGGC-CGCGGGGCCGGcCgUCGCCG-CCg -3'
miRNA:   3'- -CCGcGUGCCCCGGCCcG-AGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 2307 0.67 0.464642
Target:  5'- cGGCGCcCGGGGUCagcaccagcgGGGCggccucggCGUCGGgCu -3'
miRNA:   3'- -CCGCGuGCCCCGG----------CCCGa-------GCGGCUgG- -5'
29458 3' -65.5 NC_006151.1 + 2393 0.66 0.52716
Target:  5'- aGGCcCuCGGGGCCgcGGaGCUCGgCGagGCCc -3'
miRNA:   3'- -CCGcGuGCCCCGG--CC-CGAGCgGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 2601 0.67 0.473347
Target:  5'- aGGCGCGCGgcggcagcGGGaCCGGGgUCcggggcCCGGCg -3'
miRNA:   3'- -CCGCGUGC--------CCC-GGCCCgAGc-----GGCUGg -5'
29458 3' -65.5 NC_006151.1 + 2811 0.71 0.261098
Target:  5'- cGGCGCACugGGcGGCCGGGUccaggcggaCGCgGACg -3'
miRNA:   3'- -CCGCGUG--CC-CCGGCCCGa--------GCGgCUGg -5'
29458 3' -65.5 NC_006151.1 + 3131 0.71 0.26694
Target:  5'- aGGCcggGCGCGGGGCgcccucggCGGGCUCGgCG-Ca -3'
miRNA:   3'- -CCG---CGUGCCCCG--------GCCCGAGCgGCuGg -5'
29458 3' -65.5 NC_006151.1 + 3271 0.71 0.275296
Target:  5'- cGGCGCGCggcgaugugcgccagGGcGGCCGGGUcgaaggugagCGCCGggcGCCa -3'
miRNA:   3'- -CCGCGUG---------------CC-CCGGCCCGa---------GCGGC---UGG- -5'
29458 3' -65.5 NC_006151.1 + 3383 0.72 0.220054
Target:  5'- aGGCG-GCGaGGGCCgccucggaGGGCcgcggcgugugggucUCGCCGGCCg -3'
miRNA:   3'- -CCGCgUGC-CCCGG--------CCCG---------------AGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 3455 0.69 0.325002
Target:  5'- cGgGCGCGGGGUgcuCGGGCaugggcccgagcgggCGCCGgaGCCg -3'
miRNA:   3'- cCgCGUGCCCCG---GCCCGa--------------GCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 3532 0.66 0.508942
Target:  5'- aGCaGCGCGGGaGCgGGGUccggaGCgGGCCc -3'
miRNA:   3'- cCG-CGUGCCC-CGgCCCGag---CGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 3726 0.69 0.331229
Target:  5'- gGGCGC-UGGGuCCGGGC-CGgCGGCg -3'
miRNA:   3'- -CCGCGuGCCCcGGCCCGaGCgGCUGg -5'
29458 3' -65.5 NC_006151.1 + 3827 0.69 0.345379
Target:  5'- uGGUGCugGCGGGGCUggaGGGCccggaGCCGgggagGCCg -3'
miRNA:   3'- -CCGCG--UGCCCCGG---CCCGag---CGGC-----UGG- -5'
29458 3' -65.5 NC_006151.1 + 3894 0.76 0.112024
Target:  5'- cGGCGCugGGacgacgaGGCCGGGCU-GCUcgGGCCa -3'
miRNA:   3'- -CCGCGugCC-------CCGGCCCGAgCGG--CUGG- -5'
29458 3' -65.5 NC_006151.1 + 3934 0.72 0.233439
Target:  5'- gGGgGCAgGccGGGCgCGGGCUCcGCgGGCCc -3'
miRNA:   3'- -CCgCGUgC--CCCG-GCCCGAG-CGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 3966 0.75 0.146472
Target:  5'- gGGcCGCGCGGcGGCCucGGCgaGCCGGCCg -3'
miRNA:   3'- -CC-GCGUGCC-CCGGc-CCGagCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 4216 0.74 0.161098
Target:  5'- gGGCgGC-CGGGGCgCGGGCgggCGCgGGCa -3'
miRNA:   3'- -CCG-CGuGCCCCG-GCCCGa--GCGgCUGg -5'
29458 3' -65.5 NC_006151.1 + 4317 0.75 0.136308
Target:  5'- cGGgGCACGcGGCCGGGCUgCGCggCGGCg -3'
miRNA:   3'- -CCgCGUGCcCCGGCCCGA-GCG--GCUGg -5'
29458 3' -65.5 NC_006151.1 + 4393 0.67 0.44749
Target:  5'- cGGCGCG-GGGGuCCGcGGCgcgGCCcggguaGGCCa -3'
miRNA:   3'- -CCGCGUgCCCC-GGC-CCGag-CGG------CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.