miRNA display CGI


Results 1 - 20 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 142157 0.73 0.203076
Target:  5'- cGGCGCAgGGGGCUcguccaccuccauGGGCU--CCGACUc -3'
miRNA:   3'- -CCGCGUgCCCCGG-------------CCCGAgcGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 141747 0.71 0.25536
Target:  5'- aGGgGCGCGGGGCgCGcgccccgguGGCgUCGCCGGu- -3'
miRNA:   3'- -CCgCGUGCCCCG-GC---------CCG-AGCGGCUgg -5'
29458 3' -65.5 NC_006151.1 + 141648 0.78 0.085484
Target:  5'- cGGCGCgGCGGGGCCccgcGGGCUCGuuGuggaggcaugucuGCCu -3'
miRNA:   3'- -CCGCG-UGCCCCGG----CCCGAGCggC-------------UGG- -5'
29458 3' -65.5 NC_006151.1 + 141615 0.66 0.52716
Target:  5'- aGGCuGC-CGGGaUCGGGCgggUCGCUG-CCg -3'
miRNA:   3'- -CCG-CGuGCCCcGGCCCG---AGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 141461 0.71 0.249726
Target:  5'- gGGCGguCuGGaGCCGGGggCGCCGAguCCg -3'
miRNA:   3'- -CCGCguGcCC-CGGCCCgaGCGGCU--GG- -5'
29458 3' -65.5 NC_006151.1 + 139918 0.68 0.398246
Target:  5'- cGCGC-CGcGGGCUcgucgccguGGGC-CGCCGuCCu -3'
miRNA:   3'- cCGCGuGC-CCCGG---------CCCGaGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 139646 0.77 0.10959
Target:  5'- cGGCGCG-GGGGUCGcGGCgggcgCGCCGcCCg -3'
miRNA:   3'- -CCGCGUgCCCCGGC-CCGa----GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 139565 0.67 0.462048
Target:  5'- cGGCGCcCGGuccgcgagcGCCuGGGCUCGCgcccccccgagcggCGGCCc -3'
miRNA:   3'- -CCGCGuGCCc--------CGG-CCCGAGCG--------------GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 139429 0.7 0.310813
Target:  5'- aGGUcgGCGCGGGGacgaCGGGUUaaaggcgcccCGCCGcCCg -3'
miRNA:   3'- -CCG--CGUGCCCCg---GCCCGA----------GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 139193 0.69 0.367407
Target:  5'- uGGCGguCGGGGCgcUGGaGCUC-CUGGCg -3'
miRNA:   3'- -CCGCguGCCCCG--GCC-CGAGcGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 138503 0.68 0.393515
Target:  5'- gGGCGCccgcugcaccuccucGuccuCGGGGUgaUGGGCgcguaCGCCGGCCu -3'
miRNA:   3'- -CCGCG---------------U----GCCCCG--GCCCGa----GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 137931 0.66 0.518019
Target:  5'- gGGCGCcugcuccccuuUGGGGacgcgcccCCGGGCuUCGaCGACCc -3'
miRNA:   3'- -CCGCGu----------GCCCC--------GGCCCG-AGCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 137477 0.66 0.499933
Target:  5'- aGGCGCccUGGGacgacgacGCCGccCUCGCCGACUu -3'
miRNA:   3'- -CCGCGu-GCCC--------CGGCccGAGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 137125 0.67 0.456023
Target:  5'- gGGCGCGCGacGGCgCGGcGCgacgcggCGCCGgagaugGCCg -3'
miRNA:   3'- -CCGCGUGCc-CCG-GCC-CGa------GCGGC------UGG- -5'
29458 3' -65.5 NC_006151.1 + 137078 0.7 0.304223
Target:  5'- uGGCGCACcGGcGCCaGGCcuucgcggUGCUGGCCg -3'
miRNA:   3'- -CCGCGUGcCC-CGGcCCGa-------GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 137006 0.75 0.133066
Target:  5'- cGCGCACGGcGCUGGGCgcccUGCuCGGCCu -3'
miRNA:   3'- cCGCGUGCCcCGGCCCGa---GCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 136907 0.66 0.508942
Target:  5'- gGGUGCGCGcccccgacgaGGagcagcagcaGCCGGGCgccgacggCGCCGuCCu -3'
miRNA:   3'- -CCGCGUGC----------CC----------CGGCCCGa-------GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 136824 0.69 0.32363
Target:  5'- cGCGcCGCGcGGGCucugcgaCGcGGC-CGCCGGCCu -3'
miRNA:   3'- cCGC-GUGC-CCCG-------GC-CCGaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 136641 0.67 0.439046
Target:  5'- cGGCGCccgUGGGGCgcucgccccuCGGGgagCGCgCGGCCg -3'
miRNA:   3'- -CCGCGu--GCCCCG----------GCCCga-GCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 136411 0.7 0.310813
Target:  5'- cGGCuacGCGCGGGGCCccgcGGCggCGCaCG-CCg -3'
miRNA:   3'- -CCG---CGUGCCCCGGc---CCGa-GCG-GCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.