miRNA display CGI


Results 21 - 40 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 50381 0.66 0.518019
Target:  5'- gGGCGagACGcGGGCCccgcGGUccUCGCgCGGCCc -3'
miRNA:   3'- -CCGCg-UGC-CCCGGc---CCG--AGCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 39295 0.66 0.518019
Target:  5'- --gGCGCGGGaCCucGGCuUCGCCGGCg -3'
miRNA:   3'- ccgCGUGCCCcGGc-CCG-AGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 71322 0.66 0.518019
Target:  5'- cGGCaaGCGCGGcGGCUGcGC-CGaCGACCu -3'
miRNA:   3'- -CCG--CGUGCC-CCGGCcCGaGCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 102553 0.66 0.518019
Target:  5'- cGCGCGCGcGGGCCcuGUUUGCgCGcGCCc -3'
miRNA:   3'- cCGCGUGC-CCCGGccCGAGCG-GC-UGG- -5'
29458 3' -65.5 NC_006151.1 + 127386 0.66 0.518019
Target:  5'- gGGUgGCG-GGGGCCGcGGCcgaGUCGACg -3'
miRNA:   3'- -CCG-CGUgCCCCGGC-CCGag-CGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 127844 0.66 0.518019
Target:  5'- cGGCGuCGCGGcugcGCCggaGGGggCGCCGcCCg -3'
miRNA:   3'- -CCGC-GUGCCc---CGG---CCCgaGCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 129339 0.66 0.518019
Target:  5'- cGGCcC-CGGGGCgGccGGCgCGCCGAUa -3'
miRNA:   3'- -CCGcGuGCCCCGgC--CCGaGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 137931 0.66 0.518019
Target:  5'- gGGCGCcugcuccccuuUGGGGacgcgcccCCGGGCuUCGaCGACCc -3'
miRNA:   3'- -CCGCGu----------GCCCC--------GGCCCG-AGCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 14637 0.66 0.518019
Target:  5'- -cCGuCGgGGcGGCCGGGCUCGgguCCGGuuCCg -3'
miRNA:   3'- ccGC-GUgCC-CCGGCCCGAGC---GGCU--GG- -5'
29458 3' -65.5 NC_006151.1 + 23404 0.66 0.518019
Target:  5'- cGCGC-CaGcGCUGGuGgUCGCCGGCCg -3'
miRNA:   3'- cCGCGuGcCcCGGCC-CgAGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 64339 0.66 0.518019
Target:  5'- -aCGUcgGCGGGaaGCgCGGGC-CGUCGGCCc -3'
miRNA:   3'- ccGCG--UGCCC--CG-GCCCGaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 55181 0.66 0.517109
Target:  5'- gGGCGCgcauccuggacaGCGuGGacacgucgcaGCCGGGCUucgggcaccacggCGCCGGCg -3'
miRNA:   3'- -CCGCG------------UGC-CC----------CGGCCCGA-------------GCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 90026 0.66 0.517109
Target:  5'- uGGCGCACGugacGGCCagccccaGGGCgaUGCCGAg- -3'
miRNA:   3'- -CCGCGUGCc---CCGG-------CCCGa-GCGGCUgg -5'
29458 3' -65.5 NC_006151.1 + 51251 0.66 0.509847
Target:  5'- cGGCGCAgcuccaggucgagaaGGGcaucacgagcgcGCCcucggGGGC-CGCCGGCCa -3'
miRNA:   3'- -CCGCGUg--------------CCC------------CGG-----CCCGaGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 103809 0.66 0.508942
Target:  5'- cGCGCuguCGGcGGCCGuGGC--GgCGGCCg -3'
miRNA:   3'- cCGCGu--GCC-CCGGC-CCGagCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 82675 0.66 0.508942
Target:  5'- cGGCGCGCcGcGGGCgaGGGCggcgGCCcccgcgagGGCCa -3'
miRNA:   3'- -CCGCGUG-C-CCCGg-CCCGag--CGG--------CUGG- -5'
29458 3' -65.5 NC_006151.1 + 136907 0.66 0.508942
Target:  5'- gGGUGCGCGcccccgacgaGGagcagcagcaGCCGGGCgccgacggCGCCGuCCu -3'
miRNA:   3'- -CCGCGUGC----------CC----------CGGCCCGa-------GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 102692 0.66 0.508942
Target:  5'- gGGgGCGCccGGCgCGGGCg-GCgCGGCCg -3'
miRNA:   3'- -CCgCGUGccCCG-GCCCGagCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 100715 0.66 0.508942
Target:  5'- aGGCGCGCGaGGaGCa-GGCgccgcccgCGCCcGCCu -3'
miRNA:   3'- -CCGCGUGC-CC-CGgcCCGa-------GCGGcUGG- -5'
29458 3' -65.5 NC_006151.1 + 84636 0.66 0.508942
Target:  5'- cGGCGCugGacaacgccauGGCCgcGGGCgcgCGCCucgaGGCCg -3'
miRNA:   3'- -CCGCGugCc---------CCGG--CCCGa--GCGG----CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.