miRNA display CGI


Results 41 - 60 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 3' -65.5 NC_006151.1 + 136907 0.66 0.508942
Target:  5'- gGGUGCGCGcccccgacgaGGagcagcagcaGCCGGGCgccgacggCGCCGuCCu -3'
miRNA:   3'- -CCGCGUGC----------CC----------CGGCCCGa-------GCGGCuGG- -5'
29458 3' -65.5 NC_006151.1 + 82675 0.66 0.508942
Target:  5'- cGGCGCGCcGcGGGCgaGGGCggcgGCCcccgcgagGGCCa -3'
miRNA:   3'- -CCGCGUG-C-CCCGg-CCCGag--CGG--------CUGG- -5'
29458 3' -65.5 NC_006151.1 + 103809 0.66 0.508942
Target:  5'- cGCGCuguCGGcGGCCGuGGC--GgCGGCCg -3'
miRNA:   3'- cCGCGu--GCC-CCGGC-CCGagCgGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 125646 0.66 0.508942
Target:  5'- gGGCGUgauCGaGGGCCa-GCUCGgCGACg -3'
miRNA:   3'- -CCGCGu--GC-CCCGGccCGAGCgGCUGg -5'
29458 3' -65.5 NC_006151.1 + 89678 0.66 0.508038
Target:  5'- gGGCGCacaaagagcgagACGGccGCCGcguccaggaacccGGCggCGCCGGCCg -3'
miRNA:   3'- -CCGCG------------UGCCc-CGGC-------------CCGa-GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 90760 0.66 0.499933
Target:  5'- cGGCggGCACGGuGGCgGGG-UCGgCGGgCg -3'
miRNA:   3'- -CCG--CGUGCC-CCGgCCCgAGCgGCUgG- -5'
29458 3' -65.5 NC_006151.1 + 84823 0.66 0.499933
Target:  5'- cGCGgACGGGGCCGcgaGGUgcagaUCGCCa--- -3'
miRNA:   3'- cCGCgUGCCCCGGC---CCG-----AGCGGcugg -5'
29458 3' -65.5 NC_006151.1 + 49172 0.66 0.499933
Target:  5'- gGGCGCGCcgcgGGGuGCUGcuGCUgaacacgaCGCUGACCg -3'
miRNA:   3'- -CCGCGUG----CCC-CGGCc-CGA--------GCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 47276 0.66 0.499933
Target:  5'- cGGCGCgcagcguccGCGGcugcugugauGGgUGGGCggagCGCgGACCg -3'
miRNA:   3'- -CCGCG---------UGCC----------CCgGCCCGa---GCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 30905 0.66 0.499933
Target:  5'- aGCGCGCGGuagcGCCcgcGGGCggcccgCGCgGAUCg -3'
miRNA:   3'- cCGCGUGCCc---CGG---CCCGa-----GCGgCUGG- -5'
29458 3' -65.5 NC_006151.1 + 104364 0.66 0.499933
Target:  5'- cGGCGCcgacACGGagccgcucucgcGGCUGGcccGCaUCGCCGGCg -3'
miRNA:   3'- -CCGCG----UGCC------------CCGGCC---CG-AGCGGCUGg -5'
29458 3' -65.5 NC_006151.1 + 119762 0.66 0.499933
Target:  5'- uGGCGgACGuGGCCGGcGCgCGCauCGGCg -3'
miRNA:   3'- -CCGCgUGCcCCGGCC-CGaGCG--GCUGg -5'
29458 3' -65.5 NC_006151.1 + 103298 0.66 0.499933
Target:  5'- cGCGCGCGGcucGCgCGGcGCgaCGCCGAgCu -3'
miRNA:   3'- cCGCGUGCCc--CG-GCC-CGa-GCGGCUgG- -5'
29458 3' -65.5 NC_006151.1 + 20448 0.66 0.499933
Target:  5'- cGGa--GCGGGGCUcggGGGUggCGCCGGuCCc -3'
miRNA:   3'- -CCgcgUGCCCCGG---CCCGa-GCGGCU-GG- -5'
29458 3' -65.5 NC_006151.1 + 137477 0.66 0.499933
Target:  5'- aGGCGCccUGGGacgacgacGCCGccCUCGCCGACUu -3'
miRNA:   3'- -CCGCGu-GCCC--------CGGCccGAGCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 132757 0.66 0.499933
Target:  5'- uGGCGCccaGCaGcGCCGGGCccUCGUCGaagGCCa -3'
miRNA:   3'- -CCGCG---UGcCcCGGCCCG--AGCGGC---UGG- -5'
29458 3' -65.5 NC_006151.1 + 126370 0.66 0.499933
Target:  5'- aGGCGCgcaagaagaacaGCGGGcCCGcGCU-GCUGGCCa -3'
miRNA:   3'- -CCGCG------------UGCCCcGGCcCGAgCGGCUGG- -5'
29458 3' -65.5 NC_006151.1 + 73996 0.66 0.490995
Target:  5'- cGGCGCcacCGaGGCCaggagGGGCgucgugCGCuCGGCCa -3'
miRNA:   3'- -CCGCGu--GCcCCGG-----CCCGa-----GCG-GCUGG- -5'
29458 3' -65.5 NC_006151.1 + 69646 0.66 0.490995
Target:  5'- cGCGUGCGGcgccGCCGGG-UCGUCGaaGCCc -3'
miRNA:   3'- cCGCGUGCCc---CGGCCCgAGCGGC--UGG- -5'
29458 3' -65.5 NC_006151.1 + 66862 0.66 0.490995
Target:  5'- aGgGC-CGGGGCggcgcgaaGGGCgCGCcCGGCCc -3'
miRNA:   3'- cCgCGuGCCCCGg-------CCCGaGCG-GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.