miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29458 5' -53.1 NC_006151.1 + 102121 0.66 0.974862
Target:  5'- cGGGC-CGGAGccuguUCCcCGGGCGCG-CCGg -3'
miRNA:   3'- -CUCGaGUUUC-----AGGaGCUUGCGCaGGC- -5'
29458 5' -53.1 NC_006151.1 + 127905 0.66 0.972133
Target:  5'- cGAGCUCGGGGgccCCUCGGggaGCGgGggCGg -3'
miRNA:   3'- -CUCGAGUUUCa--GGAGCU---UGCgCagGC- -5'
29458 5' -53.1 NC_006151.1 + 59763 0.66 0.972133
Target:  5'- cAGCUC---GUCCUCGGGCaCGUCgGc -3'
miRNA:   3'- cUCGAGuuuCAGGAGCUUGcGCAGgC- -5'
29458 5' -53.1 NC_006151.1 + 99281 0.66 0.972133
Target:  5'- -cGCcacugCGAccUCCUCGAGCGCG-CCGu -3'
miRNA:   3'- cuCGa----GUUucAGGAGCUUGCGCaGGC- -5'
29458 5' -53.1 NC_006151.1 + 84564 0.66 0.969197
Target:  5'- cGGGCUucagCGAGGgCCUCGAcGCGCG-CCu -3'
miRNA:   3'- -CUCGA----GUUUCaGGAGCU-UGCGCaGGc -5'
29458 5' -53.1 NC_006151.1 + 79999 0.66 0.969197
Target:  5'- gGGGCgggUAAAaaaUUCUUGAACGCGUUCGg -3'
miRNA:   3'- -CUCGa--GUUUc--AGGAGCUUGCGCAGGC- -5'
29458 5' -53.1 NC_006151.1 + 117217 0.66 0.969197
Target:  5'- cGGGCgCGgcGUCgaCGAcgcGCGCGUCCa -3'
miRNA:   3'- -CUCGaGUuuCAGgaGCU---UGCGCAGGc -5'
29458 5' -53.1 NC_006151.1 + 84735 0.66 0.968891
Target:  5'- -cGCUCGuGGUgCUCGAggagacgGCGCGcgCCGc -3'
miRNA:   3'- cuCGAGUuUCAgGAGCU-------UGCGCa-GGC- -5'
29458 5' -53.1 NC_006151.1 + 83129 0.66 0.966046
Target:  5'- aGAGCUCGGGcgCCUUGuACGCG-CCa -3'
miRNA:   3'- -CUCGAGUUUcaGGAGCuUGCGCaGGc -5'
29458 5' -53.1 NC_006151.1 + 33895 0.66 0.966046
Target:  5'- cGGGggCGGGGgCCUCGcgccucCGCGUCCGg -3'
miRNA:   3'- -CUCgaGUUUCaGGAGCuu----GCGCAGGC- -5'
29458 5' -53.1 NC_006151.1 + 50110 0.66 0.962676
Target:  5'- cAGCUCc-GGUCCgCGGuGCGCGcCCGa -3'
miRNA:   3'- cUCGAGuuUCAGGaGCU-UGCGCaGGC- -5'
29458 5' -53.1 NC_006151.1 + 4362 0.66 0.961621
Target:  5'- cGGGCgCAGAGggCCUCGAcggucgccuccccgGCGCGggggUCCGc -3'
miRNA:   3'- -CUCGaGUUUCa-GGAGCU--------------UGCGC----AGGC- -5'
29458 5' -53.1 NC_006151.1 + 14372 0.67 0.955251
Target:  5'- -cGUUCcgGAAGaaacgCCUCGGgggucGCGCGUCCGu -3'
miRNA:   3'- cuCGAG--UUUCa----GGAGCU-----UGCGCAGGC- -5'
29458 5' -53.1 NC_006151.1 + 43276 0.67 0.951188
Target:  5'- -cGCUCugcuuuggggggGGGGUCCUCGAACcuCGUCgGg -3'
miRNA:   3'- cuCGAG------------UUUCAGGAGCUUGc-GCAGgC- -5'
29458 5' -53.1 NC_006151.1 + 100761 0.67 0.946885
Target:  5'- gGAGCUgcgCGAGG-CCgCGGAcCGCGUCCu -3'
miRNA:   3'- -CUCGA---GUUUCaGGaGCUU-GCGCAGGc -5'
29458 5' -53.1 NC_006151.1 + 88375 0.67 0.942338
Target:  5'- aGGCUCGGcg----CGAGCGCGUCCGc -3'
miRNA:   3'- cUCGAGUUucaggaGCUUGCGCAGGC- -5'
29458 5' -53.1 NC_006151.1 + 6535 0.68 0.932507
Target:  5'- aGAGC-CGGAGUCUUCaGAGucCGCG-CCGg -3'
miRNA:   3'- -CUCGaGUUUCAGGAG-CUU--GCGCaGGC- -5'
29458 5' -53.1 NC_006151.1 + 17295 0.68 0.92722
Target:  5'- gGGGCUCcccGGG-CUUCGAGC-CGUCCGc -3'
miRNA:   3'- -CUCGAGu--UUCaGGAGCUUGcGCAGGC- -5'
29458 5' -53.1 NC_006151.1 + 71208 0.68 0.921684
Target:  5'- gGAGCUCGu-GUCCgugaccgUGGGCGCGcgcgCCGa -3'
miRNA:   3'- -CUCGAGUuuCAGGa------GCUUGCGCa---GGC- -5'
29458 5' -53.1 NC_006151.1 + 83064 0.68 0.921684
Target:  5'- cAGCUU--GG-CCaCGAGCGCGUCCa -3'
miRNA:   3'- cUCGAGuuUCaGGaGCUUGCGCAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.