Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 133167 | 0.69 | 0.897069 |
Target: 5'- cGGGCgu-GGG-CCUCGGccACGCGUCCc -3' miRNA: 3'- -CUCGaguUUCaGGAGCU--UGCGCAGGc -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 127905 | 0.66 | 0.972133 |
Target: 5'- cGAGCUCGGGGgccCCUCGGggaGCGgGggCGg -3' miRNA: 3'- -CUCGAGUUUCa--GGAGCU---UGCgCagGC- -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 117217 | 0.66 | 0.969197 |
Target: 5'- cGGGCgCGgcGUCgaCGAcgcGCGCGUCCa -3' miRNA: 3'- -CUCGaGUuuCAGgaGCU---UGCGCAGGc -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 114673 | 0.72 | 0.773609 |
Target: 5'- uGAGCgccgCGAAGgCCUCGugcucgaagGGCGCGUCCc -3' miRNA: 3'- -CUCGa---GUUUCaGGAGC---------UUGCGCAGGc -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 102121 | 0.66 | 0.974862 |
Target: 5'- cGGGC-CGGAGccuguUCCcCGGGCGCG-CCGg -3' miRNA: 3'- -CUCGaGUUUC-----AGGaGCUUGCGCaGGC- -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 100761 | 0.67 | 0.946885 |
Target: 5'- gGAGCUgcgCGAGG-CCgCGGAcCGCGUCCu -3' miRNA: 3'- -CUCGA---GUUUCaGGaGCUU-GCGCAGGc -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 99281 | 0.66 | 0.972133 |
Target: 5'- -cGCcacugCGAccUCCUCGAGCGCG-CCGu -3' miRNA: 3'- cuCGa----GUUucAGGAGCUUGCGCaGGC- -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 96647 | 0.68 | 0.909867 |
Target: 5'- cGAGCUCGgcggcGAGggCC-CGGGCGaCGUCCu -3' miRNA: 3'- -CUCGAGU-----UUCa-GGaGCUUGC-GCAGGc -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 96153 | 0.78 | 0.450691 |
Target: 5'- -cGCgUCAAAGaCCUCGGgccACGCGUCCGa -3' miRNA: 3'- cuCG-AGUUUCaGGAGCU---UGCGCAGGC- -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 88786 | 0.69 | 0.886138 |
Target: 5'- -cGCUCGc---CCUCGAcgacgacgggcgcgaGCGCGUCCGg -3' miRNA: 3'- cuCGAGUuucaGGAGCU---------------UGCGCAGGC- -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 88375 | 0.67 | 0.942338 |
Target: 5'- aGGCUCGGcg----CGAGCGCGUCCGc -3' miRNA: 3'- cUCGAGUUucaggaGCUUGCGCAGGC- -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 88106 | 0.68 | 0.909867 |
Target: 5'- cGGGCccgUCGAGGUCCgacagcgggCGGGCGC-UCCGc -3' miRNA: 3'- -CUCG---AGUUUCAGGa--------GCUUGCGcAGGC- -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 84735 | 0.66 | 0.968891 |
Target: 5'- -cGCUCGuGGUgCUCGAggagacgGCGCGcgCCGc -3' miRNA: 3'- cuCGAGUuUCAgGAGCU-------UGCGCa-GGC- -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 84564 | 0.66 | 0.969197 |
Target: 5'- cGGGCUucagCGAGGgCCUCGAcGCGCG-CCu -3' miRNA: 3'- -CUCGA----GUUUCaGGAGCU-UGCGCaGGc -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 83168 | 0.68 | 0.915899 |
Target: 5'- gGAGCUCGGGGUCgUC--GCGCGggCGg -3' miRNA: 3'- -CUCGAGUUUCAGgAGcuUGCGCagGC- -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 83129 | 0.66 | 0.966046 |
Target: 5'- aGAGCUCGGGcgCCUUGuACGCG-CCa -3' miRNA: 3'- -CUCGAGUUUcaGGAGCuUGCGCaGGc -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 83064 | 0.68 | 0.921684 |
Target: 5'- cAGCUU--GG-CCaCGAGCGCGUCCa -3' miRNA: 3'- cUCGAGuuUCaGGaGCUUGCGCAGGc -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 79999 | 0.66 | 0.969197 |
Target: 5'- gGGGCgggUAAAaaaUUCUUGAACGCGUUCGg -3' miRNA: 3'- -CUCGa--GUUUc--AGGAGCUUGCGCAGGC- -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 74921 | 0.72 | 0.754272 |
Target: 5'- uGAGCUCGAAG-CCgc--GCGCGUCCc -3' miRNA: 3'- -CUCGAGUUUCaGGagcuUGCGCAGGc -5' |
|||||||
29458 | 5' | -53.1 | NC_006151.1 | + | 71208 | 0.68 | 0.921684 |
Target: 5'- gGAGCUCGu-GUCCgugaccgUGGGCGCGcgcgCCGa -3' miRNA: 3'- -CUCGAGUuuCAGGa------GCUUGCGCa---GGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home