miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29459 3' -60.5 NC_006151.1 + 31190 0.66 0.715799
Target:  5'- --cGGUCCGcCGCaCaGUGUgGCCCGCg -3'
miRNA:   3'- ggaCCAGGC-GCG-GaCGUAgCGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 31359 0.7 0.483242
Target:  5'- cCCcGGUCCGCGCCgGCAcC-CCCuuuucuCCg -3'
miRNA:   3'- -GGaCCAGGCGCGGaCGUaGcGGGu-----GG- -5'
29459 3' -60.5 NC_006151.1 + 31615 0.68 0.627623
Target:  5'- gCCUGGgcggggaugCCGCGCCgGCAcgaGCgCACg -3'
miRNA:   3'- -GGACCa--------GGCGCGGaCGUag-CGgGUGg -5'
29459 3' -60.5 NC_006151.1 + 31750 0.7 0.465082
Target:  5'- gCCgGGgaCGCGCCUGCGgcggcgggCGCgCGCCg -3'
miRNA:   3'- -GGaCCagGCGCGGACGUa-------GCGgGUGG- -5'
29459 3' -60.5 NC_006151.1 + 32036 0.66 0.725371
Target:  5'- cCCUccGcGUCCGCaGCCgccucUGCAgccgcCGCCCGCg -3'
miRNA:   3'- -GGA--C-CAGGCG-CGG-----ACGUa----GCGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 34249 0.69 0.5589
Target:  5'- gCC-GGUCuCGCGCCcccuccCGCCCGCCc -3'
miRNA:   3'- -GGaCCAG-GCGCGGacgua-GCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 35086 0.67 0.657255
Target:  5'- --gGGUCgCGUGCCgaGCAUgcgccucgCGCCCGCg -3'
miRNA:   3'- ggaCCAG-GCGCGGa-CGUA--------GCGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 37363 0.67 0.654296
Target:  5'- cCCUGGcccggcuccgacccUCCG-GCCgacgGCcgCGUCCGCUa -3'
miRNA:   3'- -GGACC--------------AGGCgCGGa---CGuaGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 37967 0.73 0.327158
Target:  5'- gCUGG-CgGaCGCCUGCGUCcugGCCUGCCg -3'
miRNA:   3'- gGACCaGgC-GCGGACGUAG---CGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 37998 0.66 0.744281
Target:  5'- --gGcGUCCucgaGCGCCUGCugcccUGCCCGCUc -3'
miRNA:   3'- ggaC-CAGG----CGCGGACGua---GCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 38033 0.67 0.657255
Target:  5'- gCUGc-CCGCGCCcGCccgCGCCCcgGCCg -3'
miRNA:   3'- gGACcaGGCGCGGaCGua-GCGGG--UGG- -5'
29459 3' -60.5 NC_006151.1 + 38238 0.66 0.706161
Target:  5'- gCCUGGaCCuaCGCCgcgGCccucuUCGCCCcgGCCa -3'
miRNA:   3'- -GGACCaGGc-GCGGa--CGu----AGCGGG--UGG- -5'
29459 3' -60.5 NC_006151.1 + 38985 0.67 0.657255
Target:  5'- cCCUGGcgcacaucgCCGCGCgCcGCggCGCCCcgcuccGCCg -3'
miRNA:   3'- -GGACCa--------GGCGCG-GaCGuaGCGGG------UGG- -5'
29459 3' -60.5 NC_006151.1 + 39146 0.79 0.14805
Target:  5'- gCCUGGgacCCGCGCCgcggcggccucucgGCGcugcucgccgccuUCGCCCACCg -3'
miRNA:   3'- -GGACCa--GGCGCGGa-------------CGU-------------AGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 39237 0.68 0.627623
Target:  5'- aCUGGaCCggGCGCCccGaCAUCGgCCGCCu -3'
miRNA:   3'- gGACCaGG--CGCGGa-C-GUAGCgGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 39529 0.73 0.356737
Target:  5'- --gGGcCCG-GCCUGCuUCGCCCGCg -3'
miRNA:   3'- ggaCCaGGCgCGGACGuAGCGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 39654 0.71 0.412862
Target:  5'- cCCcGGUcCCGCuGCCgccGCG-CGCCUACCg -3'
miRNA:   3'- -GGaCCA-GGCG-CGGa--CGUaGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 39962 0.67 0.667104
Target:  5'- cCCcGGgcgCCGuCGCCgccGCGggCGCcCCGCCg -3'
miRNA:   3'- -GGaCCa--GGC-GCGGa--CGUa-GCG-GGUGG- -5'
29459 3' -60.5 NC_006151.1 + 40027 0.66 0.725371
Target:  5'- aCCaGcGUCCGCGCCgccgccggggGCGcCGuggagaCCCACCg -3'
miRNA:   3'- -GGaC-CAGGCGCGGa---------CGUaGC------GGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 40421 0.69 0.54826
Target:  5'- gCCUcGGUCCccucggcccggcgGCGCUUGCcuccccggCGCCUGCCu -3'
miRNA:   3'- -GGA-CCAGG-------------CGCGGACGua------GCGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.