miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29459 3' -60.5 NC_006151.1 + 720 0.72 0.396275
Target:  5'- aCCgggGGUCCGCGggcgggggcuuCCgcuccGCggCGCCCGCCc -3'
miRNA:   3'- -GGa--CCAGGCGC-----------GGa----CGuaGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 2621 0.67 0.657255
Target:  5'- aCCggGGUCCgGgGCCcgGCGcgggUGCUCACCg -3'
miRNA:   3'- -GGa-CCAGG-CgCGGa-CGUa---GCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 4115 0.66 0.706161
Target:  5'- --aGaGUCCGCgGCCUGCcgcCGCUCgGCCg -3'
miRNA:   3'- ggaC-CAGGCG-CGGACGua-GCGGG-UGG- -5'
29459 3' -60.5 NC_006151.1 + 5672 0.68 0.628611
Target:  5'- gCUGGggaagcgggcccccgCCGUGCCgGCGcugCGgCCACCg -3'
miRNA:   3'- gGACCa--------------GGCGCGGaCGUa--GCgGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 5735 0.68 0.588188
Target:  5'- gCCggGGUCCGagGCC-GCGcCGCCgGCCc -3'
miRNA:   3'- -GGa-CCAGGCg-CGGaCGUaGCGGgUGG- -5'
29459 3' -60.5 NC_006151.1 + 10485 0.66 0.715799
Target:  5'- --aGGagagCCGC-CCgGCGcgCGCCCGCCg -3'
miRNA:   3'- ggaCCa---GGCGcGGaCGUa-GCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 13970 0.67 0.686717
Target:  5'- gCCaUGGgggagCCGgGCCcGCGUCcccgggGCCCACg -3'
miRNA:   3'- -GG-ACCa----GGCgCGGaCGUAG------CGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 14666 0.76 0.221944
Target:  5'- uCCgGGUCgGCGUCggggaGCcUCGCCCACCc -3'
miRNA:   3'- -GGaCCAGgCGCGGa----CGuAGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 16883 0.68 0.588188
Target:  5'- --cGGggCGCGCUcgcguccguUGCcgCGCCCGCCc -3'
miRNA:   3'- ggaCCagGCGCGG---------ACGuaGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 17549 0.68 0.627623
Target:  5'- --aGGUCCGgGUgcGCcUCGCCCACg -3'
miRNA:   3'- ggaCCAGGCgCGgaCGuAGCGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 17818 0.66 0.725371
Target:  5'- uCCUGGg-CGCGgCgggGCGggCGgCCACCa -3'
miRNA:   3'- -GGACCagGCGCgGa--CGUa-GCgGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 18430 0.72 0.380124
Target:  5'- --aGGgCCGCcgGCggGCGUCGCCCGCCu -3'
miRNA:   3'- ggaCCaGGCG--CGgaCGUAGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 18700 0.66 0.744281
Target:  5'- --cGGgCgGCGCCgGCGUCGUgaCGCCg -3'
miRNA:   3'- ggaCCaGgCGCGGaCGUAGCGg-GUGG- -5'
29459 3' -60.5 NC_006151.1 + 19292 0.69 0.549225
Target:  5'- aCCgGGgccagCgGCGCggGCggccgGUCGCCCACCg -3'
miRNA:   3'- -GGaCCa----GgCGCGgaCG-----UAGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 19376 0.73 0.349169
Target:  5'- --aGGcCCGUGUCguuggGCGUgGCCCGCCg -3'
miRNA:   3'- ggaCCaGGCGCGGa----CGUAgCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 21972 0.68 0.588188
Target:  5'- gCgUGGUgCgGCGCCgGCAgCGCCCAa- -3'
miRNA:   3'- -GgACCA-GgCGCGGaCGUaGCGGGUgg -5'
29459 3' -60.5 NC_006151.1 + 22304 0.75 0.267384
Target:  5'- uCCacGUCCGCGCCgaGCGUCGUCCgggcgACCa -3'
miRNA:   3'- -GGacCAGGCGCGGa-CGUAGCGGG-----UGG- -5'
29459 3' -60.5 NC_006151.1 + 23379 0.66 0.704226
Target:  5'- cCCUcgucGGUcgaggggaagcacCCGCGCCaGCgcuggugGUCGCCgGCCg -3'
miRNA:   3'- -GGA----CCA-------------GGCGCGGaCG-------UAGCGGgUGG- -5'
29459 3' -60.5 NC_006151.1 + 28551 0.68 0.617742
Target:  5'- -aUGGgggagCCGUGCCcGCGUCccgggaGCCCGCa -3'
miRNA:   3'- ggACCa----GGCGCGGaCGUAG------CGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 30927 0.66 0.715799
Target:  5'- --cGGcCCGCGC--GgAUCGCCCGCg -3'
miRNA:   3'- ggaCCaGGCGCGgaCgUAGCGGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.