miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29459 3' -60.5 NC_006151.1 + 62441 1.13 0.000611
Target:  5'- gCCUGGUCCGCGCCUGCAUCGCCCACCg -3'
miRNA:   3'- -GGACCAGGCGCGGACGUAGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 39146 0.79 0.14805
Target:  5'- gCCUGGgacCCGCGCCgcggcggccucucgGCGcugcucgccgccuUCGCCCACCg -3'
miRNA:   3'- -GGACCa--GGCGCGGa-------------CGU-------------AGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 137642 0.78 0.166226
Target:  5'- cCCUcGUCCGCGCCcccgucccgGCGgacgagCGCCCGCCg -3'
miRNA:   3'- -GGAcCAGGCGCGGa--------CGUa-----GCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 98680 0.78 0.174552
Target:  5'- uCCUGG-CCGCGCCccGCGUCguGCCC-CCg -3'
miRNA:   3'- -GGACCaGGCGCGGa-CGUAG--CGGGuGG- -5'
29459 3' -60.5 NC_006151.1 + 100631 0.77 0.187737
Target:  5'- aCCUGGUCaGCGCC-GCGcugCGCCgCGCCg -3'
miRNA:   3'- -GGACCAGgCGCGGaCGUa--GCGG-GUGG- -5'
29459 3' -60.5 NC_006151.1 + 14666 0.76 0.221944
Target:  5'- uCCgGGUCgGCGUCggggaGCcUCGCCCACCc -3'
miRNA:   3'- -GGaCCAGgCGCGGa----CGuAGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 132301 0.76 0.232649
Target:  5'- aCCUGGUCCGCGUgcagGCGccacgagagcUCGCgCGCCg -3'
miRNA:   3'- -GGACCAGGCGCGga--CGU----------AGCGgGUGG- -5'
29459 3' -60.5 NC_006151.1 + 92234 0.76 0.238163
Target:  5'- gCUGca-CGCGCCgcGCAUCGUCCACCg -3'
miRNA:   3'- gGACcagGCGCGGa-CGUAGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 22304 0.75 0.267384
Target:  5'- uCCacGUCCGCGCCgaGCGUCGUCCgggcgACCa -3'
miRNA:   3'- -GGacCAGGCGCGGa-CGUAGCGGG-----UGG- -5'
29459 3' -60.5 NC_006151.1 + 56592 0.74 0.313064
Target:  5'- gCUGGUgcggaCGCGCCccgGCGgcgCGCUCACCg -3'
miRNA:   3'- gGACCAg----GCGCGGa--CGUa--GCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 37967 0.73 0.327158
Target:  5'- gCUGG-CgGaCGCCUGCGUCcugGCCUGCCg -3'
miRNA:   3'- gGACCaGgC-GCGGACGUAG---CGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 60683 0.73 0.341716
Target:  5'- gCCgccGUCCucccgcGCGCCcGCcgCGCCCGCCg -3'
miRNA:   3'- -GGac-CAGG------CGCGGaCGuaGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 19376 0.73 0.349169
Target:  5'- --aGGcCCGUGUCguuggGCGUgGCCCGCCg -3'
miRNA:   3'- ggaCCaGGCGCGGa----CGUAgCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 114438 0.73 0.356737
Target:  5'- gCUGGaCCGCcugcucgggGCCUGCGcCGgCCACCg -3'
miRNA:   3'- gGACCaGGCG---------CGGACGUaGCgGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 67171 0.73 0.356737
Target:  5'- uCCUGGUCC-CGCU--CAUCGCCCucgcgcugGCCa -3'
miRNA:   3'- -GGACCAGGcGCGGacGUAGCGGG--------UGG- -5'
29459 3' -60.5 NC_006151.1 + 39529 0.73 0.356737
Target:  5'- --gGGcCCG-GCCUGCuUCGCCCGCg -3'
miRNA:   3'- ggaCCaGGCgCGGACGuAGCGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 107601 0.72 0.364419
Target:  5'- gCUGGcCC-CGCCgGCGccgcCGCCCGCCa -3'
miRNA:   3'- gGACCaGGcGCGGaCGUa---GCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 84464 0.72 0.364419
Target:  5'- gCCaUGGaCCGCGCgUGguUCGCCUucgagGCCg -3'
miRNA:   3'- -GG-ACCaGGCGCGgACguAGCGGG-----UGG- -5'
29459 3' -60.5 NC_006151.1 + 127852 0.72 0.372215
Target:  5'- --cGG-CUGCGCCggaggggGCGcCGCCCGCCg -3'
miRNA:   3'- ggaCCaGGCGCGGa------CGUaGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 18430 0.72 0.380124
Target:  5'- --aGGgCCGCcgGCggGCGUCGCCCGCCu -3'
miRNA:   3'- ggaCCaGGCG--CGgaCGUAGCGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.