miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29459 5' -54.8 NC_006151.1 + 62477 1.08 0.003752
Target:  5'- gCAGCCGGUUCUACGCCAACGUGGACAa -3'
miRNA:   3'- -GUCGGCCAAGAUGCGGUUGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 120099 0.87 0.094005
Target:  5'- cCAGCCGGUgCUGCGCCGccGCGUGGugGa -3'
miRNA:   3'- -GUCGGCCAaGAUGCGGU--UGCACCugU- -5'
29459 5' -54.8 NC_006151.1 + 133341 0.76 0.441488
Target:  5'- gCGGCCGGUUCcGCGgCGGCgGUGGugGu -3'
miRNA:   3'- -GUCGGCCAAGaUGCgGUUG-CACCugU- -5'
29459 5' -54.8 NC_006151.1 + 123020 0.73 0.578587
Target:  5'- -cGCCGGcgg-ACGCCGugGCGUGGGCGg -3'
miRNA:   3'- guCGGCCaagaUGCGGU--UGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 104110 0.72 0.619865
Target:  5'- gCGGCCGaGUUCgUGCGCCugcgcGACGUGG-CGg -3'
miRNA:   3'- -GUCGGC-CAAG-AUGCGG-----UUGCACCuGU- -5'
29459 5' -54.8 NC_006151.1 + 60918 0.72 0.640592
Target:  5'- gGGCCaGUc--GCGCCAugGUGGGCGa -3'
miRNA:   3'- gUCGGcCAagaUGCGGUugCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 92280 0.72 0.671609
Target:  5'- -cGCCacauGggCUACGCCuACGUGGACGu -3'
miRNA:   3'- guCGGc---CaaGAUGCGGuUGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 97696 0.71 0.702328
Target:  5'- cCAGCCGGUcUUGCGUC-ACGUGGcCc -3'
miRNA:   3'- -GUCGGCCAaGAUGCGGuUGCACCuGu -5'
29459 5' -54.8 NC_006151.1 + 25275 0.71 0.712459
Target:  5'- gAGuuGGUgugugugCUugGCCGcggggACGUGGGCGa -3'
miRNA:   3'- gUCggCCAa------GAugCGGU-----UGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 30234 0.71 0.712459
Target:  5'- gGGcCCGGggUUGCGCCGGCG-GGAgAg -3'
miRNA:   3'- gUC-GGCCaaGAUGCGGUUGCaCCUgU- -5'
29459 5' -54.8 NC_006151.1 + 37834 0.7 0.732501
Target:  5'- -cGCCGGgcCUACGCCGACaUGGcCu -3'
miRNA:   3'- guCGGCCaaGAUGCGGUUGcACCuGu -5'
29459 5' -54.8 NC_006151.1 + 83638 0.7 0.761871
Target:  5'- gCGGCCuGGUgCUGCGCCGugACGaGGGCc -3'
miRNA:   3'- -GUCGG-CCAaGAUGCGGU--UGCaCCUGu -5'
29459 5' -54.8 NC_006151.1 + 141824 0.7 0.761871
Target:  5'- gGGCCGGUUCgggggucccGCGCuCGACGcgagGGGCu -3'
miRNA:   3'- gUCGGCCAAGa--------UGCG-GUUGCa---CCUGu -5'
29459 5' -54.8 NC_006151.1 + 38194 0.7 0.761871
Target:  5'- -cGCUGGU---GCGCUAcaGCGUGGACGg -3'
miRNA:   3'- guCGGCCAagaUGCGGU--UGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 70734 0.69 0.808337
Target:  5'- uGGCCGGcacgCUgcACGUguACGUGGACc -3'
miRNA:   3'- gUCGGCCaa--GA--UGCGguUGCACCUGu -5'
29459 5' -54.8 NC_006151.1 + 73692 0.68 0.834324
Target:  5'- uCGGCgCGGcUCUGCGCC-GCGUgcuGGGCc -3'
miRNA:   3'- -GUCG-GCCaAGAUGCGGuUGCA---CCUGu -5'
29459 5' -54.8 NC_006151.1 + 20129 0.68 0.834324
Target:  5'- gGGCUGGggggCggGCGCCGcgggggcggcGCGUGGACc -3'
miRNA:   3'- gUCGGCCaa--Ga-UGCGGU----------UGCACCUGu -5'
29459 5' -54.8 NC_006151.1 + 4218 0.68 0.84262
Target:  5'- gCGGCCGGg---GCGCgGGCGggcgcGGGCAg -3'
miRNA:   3'- -GUCGGCCaagaUGCGgUUGCa----CCUGU- -5'
29459 5' -54.8 NC_006151.1 + 113133 0.68 0.848311
Target:  5'- -cGCCGGgcccggCUACGCCGACcucgccaugcugcuGcUGGGCAa -3'
miRNA:   3'- guCGGCCaa----GAUGCGGUUG--------------C-ACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 81758 0.68 0.85072
Target:  5'- gAGCUGGUcCgcggGCGCCAcCG-GGACGc -3'
miRNA:   3'- gUCGGCCAaGa---UGCGGUuGCaCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.